Hb_005273_040

Information

Type -
Description -
Location Contig5273: 37485-40491
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005273_040 0.0 - - -
2 Hb_002407_080 0.196630026 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
3 Hb_001587_010 0.2054896895 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
4 Hb_002299_050 0.2321592692 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
5 Hb_001329_240 0.2459515029 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
6 Hb_001278_070 0.2476813976 - - hypothetical protein glysoja_020139 [Glycine soja]
7 Hb_000209_110 0.256194914 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
8 Hb_000384_030 0.2608915649 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
9 Hb_002972_020 0.2747566688 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
10 Hb_000544_100 0.278227357 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
11 Hb_009898_020 0.2787718748 - - hypothetical protein JCGZ_23951 [Jatropha curcas]
12 Hb_060411_010 0.2805721991 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
13 Hb_004342_030 0.2815981091 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_003073_180 0.2869062421 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
15 Hb_024505_050 0.2883911005 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
16 Hb_004242_190 0.2902073121 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_002477_220 0.2933951125 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
18 Hb_002289_100 0.2938721607 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
19 Hb_001636_020 0.2950577117 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
20 Hb_002400_100 0.2952637273 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005273_040 Hb_005273_040 Hb_002407_080 Hb_002407_080 Hb_005273_040--Hb_002407_080 Hb_001587_010 Hb_001587_010 Hb_005273_040--Hb_001587_010 Hb_002299_050 Hb_002299_050 Hb_005273_040--Hb_002299_050 Hb_001329_240 Hb_001329_240 Hb_005273_040--Hb_001329_240 Hb_001278_070 Hb_001278_070 Hb_005273_040--Hb_001278_070 Hb_000209_110 Hb_000209_110 Hb_005273_040--Hb_000209_110 Hb_004242_190 Hb_004242_190 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_001258_060 Hb_001258_060 Hb_002407_080--Hb_001258_060 Hb_000009_620 Hb_000009_620 Hb_002407_080--Hb_000009_620 Hb_001587_010--Hb_002407_080 Hb_001587_010--Hb_002299_050 Hb_009848_010 Hb_009848_010 Hb_001587_010--Hb_009848_010 Hb_001587_010--Hb_000209_110 Hb_003160_020 Hb_003160_020 Hb_001587_010--Hb_003160_020 Hb_065525_030 Hb_065525_030 Hb_002299_050--Hb_065525_030 Hb_000984_050 Hb_000984_050 Hb_002299_050--Hb_000984_050 Hb_002299_050--Hb_001278_070 Hb_002299_050--Hb_002407_080 Hb_024505_050 Hb_024505_050 Hb_001329_240--Hb_024505_050 Hb_006816_170 Hb_006816_170 Hb_001329_240--Hb_006816_170 Hb_001247_200 Hb_001247_200 Hb_001329_240--Hb_001247_200 Hb_123051_020 Hb_123051_020 Hb_001329_240--Hb_123051_020 Hb_002489_010 Hb_002489_010 Hb_001329_240--Hb_002489_010 Hb_002131_040 Hb_002131_040 Hb_001329_240--Hb_002131_040 Hb_000384_030 Hb_000384_030 Hb_001278_070--Hb_000384_030 Hb_111198_020 Hb_111198_020 Hb_001278_070--Hb_111198_020 Hb_001089_020 Hb_001089_020 Hb_001278_070--Hb_001089_020 Hb_007904_220 Hb_007904_220 Hb_001278_070--Hb_007904_220 Hb_001541_080 Hb_001541_080 Hb_001278_070--Hb_001541_080 Hb_002217_150 Hb_002217_150 Hb_001278_070--Hb_002217_150 Hb_000544_100 Hb_000544_100 Hb_000209_110--Hb_000544_100 Hb_000209_110--Hb_003073_180 Hb_006586_030 Hb_006586_030 Hb_000209_110--Hb_006586_030 Hb_000093_150 Hb_000093_150 Hb_000209_110--Hb_000093_150 Hb_004462_010 Hb_004462_010 Hb_000209_110--Hb_004462_010 Hb_000209_110--Hb_002407_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09177 0.132491 0.0607873 0.275888 2.50052 1.44125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.436764 0.51538 0.427995 5.81734 0.654962

CAGE analysis