Hb_005276_010

Information

Type -
Description -
Location Contig5276: 918-6420
Sequence    

Annotation

kegg
ID cic:CICLE_v10021605mg
description hypothetical protein
nr
ID XP_006444064.1
description hypothetical protein CICLE_v10021605mg [Citrus clementina]
swissprot
ID Q9M1X0
description Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=2 SV=2
trembl
ID A0A067FZW6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023857mg PE=3 SV=1
Gene Ontology
ID GO:0009570
description ribosome-recycling chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47077: 5639-6359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_010 0.0 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
2 Hb_001946_160 0.0634712464 - - putative chaperon P13.9 [Castanea sativa]
3 Hb_000941_100 0.0824924225 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
4 Hb_000164_140 0.0867504567 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_029920_030 0.0868841388 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
6 Hb_016461_030 0.0888469153 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000816_200 0.0917738593 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_003777_020 0.0922023502 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
9 Hb_000480_040 0.0940084833 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
10 Hb_011861_050 0.0974721963 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
11 Hb_002685_060 0.1013391446 - - 30S ribosomal protein S5, putative [Ricinus communis]
12 Hb_000345_370 0.101457347 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
13 Hb_005147_080 0.1040540476 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000059_270 0.1045469461 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
15 Hb_000309_020 0.1048099801 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
16 Hb_000112_060 0.1057305287 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
17 Hb_002542_160 0.1060451828 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
18 Hb_001195_770 0.1094274624 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_007054_070 0.1115050966 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
20 Hb_001449_070 0.1133605081 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005276_010 Hb_005276_010 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_000941_100 Hb_000941_100 Hb_005276_010--Hb_000941_100 Hb_000164_140 Hb_000164_140 Hb_005276_010--Hb_000164_140 Hb_029920_030 Hb_029920_030 Hb_005276_010--Hb_029920_030 Hb_016461_030 Hb_016461_030 Hb_005276_010--Hb_016461_030 Hb_000816_200 Hb_000816_200 Hb_005276_010--Hb_000816_200 Hb_001946_160--Hb_000941_100 Hb_025194_060 Hb_025194_060 Hb_001946_160--Hb_025194_060 Hb_005127_030 Hb_005127_030 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_005725_220 Hb_005725_220 Hb_000164_140--Hb_005725_220 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_005846_030 Hb_005846_030 Hb_000164_140--Hb_005846_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_029920_030--Hb_000816_200 Hb_029920_030--Hb_016461_030 Hb_029920_030--Hb_001195_770 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_016461_030--Hb_000816_200 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56076 3.39063 12.4333 6.6075 3.52203 5.56587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.32322 6.25656 4.0588 3.04867 21.9808

CAGE analysis