Hb_005276_060

Information

Type -
Description -
Location Contig5276: 48082-50125
Sequence    

Annotation

kegg
ID rcu:RCOM_0557800
description cyclin-dependent protein kinase, putative
nr
ID XP_012092244.1
description PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
swissprot
ID Q75HV0
description Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
trembl
ID A0A067JPJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21930 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cyclin-p3-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47084: 48108-50383 , PASA_asmbl_47085: 48108-49878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_060 0.0 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
2 Hb_012395_170 0.0455912727 - - conserved hypothetical protein [Ricinus communis]
3 Hb_084247_010 0.0625856964 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000009_400 0.0641816558 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
5 Hb_001016_050 0.0652140396 - - drought-inducible protein [Manihot esculenta]
6 Hb_003617_020 0.07828682 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
7 Hb_003929_170 0.078317867 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
8 Hb_000390_250 0.0861997065 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
9 Hb_000329_230 0.0865015651 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
10 Hb_000322_070 0.0881903183 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
11 Hb_012322_020 0.0897841475 - - -
12 Hb_001087_030 0.0917988575 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
13 Hb_002876_320 0.0918150164 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
14 Hb_002028_210 0.0925207923 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
15 Hb_000046_570 0.0946070007 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
16 Hb_003929_070 0.0948447403 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
17 Hb_000635_040 0.0955604932 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_006658_020 0.0964883553 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
19 Hb_000061_240 0.0973160274 - - kinase, putative [Ricinus communis]
20 Hb_030827_020 0.0988470689 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005276_060 Hb_005276_060 Hb_012395_170 Hb_012395_170 Hb_005276_060--Hb_012395_170 Hb_084247_010 Hb_084247_010 Hb_005276_060--Hb_084247_010 Hb_000009_400 Hb_000009_400 Hb_005276_060--Hb_000009_400 Hb_001016_050 Hb_001016_050 Hb_005276_060--Hb_001016_050 Hb_003617_020 Hb_003617_020 Hb_005276_060--Hb_003617_020 Hb_003929_170 Hb_003929_170 Hb_005276_060--Hb_003929_170 Hb_012395_170--Hb_084247_010 Hb_012395_170--Hb_003617_020 Hb_012395_170--Hb_003929_170 Hb_001124_010 Hb_001124_010 Hb_012395_170--Hb_001124_010 Hb_000390_250 Hb_000390_250 Hb_012395_170--Hb_000390_250 Hb_005162_090 Hb_005162_090 Hb_084247_010--Hb_005162_090 Hb_084247_010--Hb_001124_010 Hb_003929_070 Hb_003929_070 Hb_084247_010--Hb_003929_070 Hb_013575_010 Hb_013575_010 Hb_084247_010--Hb_013575_010 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_006658_020 Hb_006658_020 Hb_001016_050--Hb_006658_020 Hb_001016_050--Hb_000009_400 Hb_004109_230 Hb_004109_230 Hb_001016_050--Hb_004109_230 Hb_008253_020 Hb_008253_020 Hb_001016_050--Hb_008253_020 Hb_007810_110 Hb_007810_110 Hb_001016_050--Hb_007810_110 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_003617_020--Hb_000322_070 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7482 28.6623 26.6232 50.4579 24.6932 24.7686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3628 22.6249 24.6982 14.0096 23.8134

CAGE analysis