Hb_005276_100

Information

Type -
Description -
Location Contig5276: 76495-80161
Sequence    

Annotation

kegg
ID rcu:RCOM_0558160
description hypothetical protein
nr
ID XP_012079862.1
description PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K485
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47091: 76531-80094
cDNA
(Sanger)
(ID:Location)		 005_P17.ab1: 76803-80088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_100 0.0 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
2 Hb_000143_050 0.0964220412 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
3 Hb_000580_160 0.1089589133 - - Nitrate transporter 1.5 [Morus notabilis]
4 Hb_000032_260 0.1100957261 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
5 Hb_000061_160 0.1115084195 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
6 Hb_001621_180 0.1126503736 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
7 Hb_000853_360 0.1138519711 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
8 Hb_005615_070 0.1212974636 - - Rab7 [Hevea brasiliensis]
9 Hb_007441_180 0.1292965701 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006469_060 0.1297920556 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
11 Hb_000563_590 0.1304607098 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_012779_110 0.1304794372 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
13 Hb_005867_040 0.1354050329 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
14 Hb_000025_290 0.1362469433 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
15 Hb_007451_030 0.1407490171 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
16 Hb_001035_030 0.1430509643 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
17 Hb_030765_020 0.1443822528 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_002221_080 0.1452428427 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
19 Hb_004055_060 0.146983719 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
20 Hb_000599_090 0.148540655 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_005276_100 Hb_005276_100 Hb_000143_050 Hb_000143_050 Hb_005276_100--Hb_000143_050 Hb_000580_160 Hb_000580_160 Hb_005276_100--Hb_000580_160 Hb_000032_260 Hb_000032_260 Hb_005276_100--Hb_000032_260 Hb_000061_160 Hb_000061_160 Hb_005276_100--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_005276_100--Hb_001621_180 Hb_000853_360 Hb_000853_360 Hb_005276_100--Hb_000853_360 Hb_030765_020 Hb_030765_020 Hb_000143_050--Hb_030765_020 Hb_000143_050--Hb_000032_260 Hb_005615_070 Hb_005615_070 Hb_000143_050--Hb_005615_070 Hb_001722_040 Hb_001722_040 Hb_000143_050--Hb_001722_040 Hb_183963_020 Hb_183963_020 Hb_000143_050--Hb_183963_020 Hb_003023_050 Hb_003023_050 Hb_000580_160--Hb_003023_050 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_012779_110 Hb_012779_110 Hb_000580_160--Hb_012779_110 Hb_004055_060 Hb_004055_060 Hb_000580_160--Hb_004055_060 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_005867_040 Hb_005867_040 Hb_000032_260--Hb_005867_040 Hb_000032_260--Hb_001621_180 Hb_000032_260--Hb_000061_160 Hb_000032_260--Hb_183963_020 Hb_001104_120 Hb_001104_120 Hb_000061_160--Hb_001104_120 Hb_000777_060 Hb_000777_060 Hb_000061_160--Hb_000777_060 Hb_000061_160--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_000061_160--Hb_000563_590 Hb_000330_170 Hb_000330_170 Hb_000061_160--Hb_000330_170 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120 Hb_006132_050 Hb_006132_050 Hb_000853_360--Hb_006132_050 Hb_002326_180 Hb_002326_180 Hb_000853_360--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_000853_360--Hb_000617_050 Hb_001616_020 Hb_001616_020 Hb_000853_360--Hb_001616_020 Hb_000106_090 Hb_000106_090 Hb_000853_360--Hb_000106_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.2629 8.56335 0.763211 1.83495 64.6005 51.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.7535 178.013 55.9358 14.627 0.855101

CAGE analysis