Hb_005276_170

Information

Type -
Description -
Location Contig5276: 188061-197653
Sequence    

Annotation

kegg
ID rcu:RCOM_0558500
description rac-GTP binding protein, putative
nr
ID XP_012092252.1
description PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
swissprot
ID F4J0W4
description Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana GN=MIRO2 PE=2 SV=1
trembl
ID A0A067JC93
description Mitochondrial Rho GTPase OS=Jatropha curcas GN=JCGZ_21937 PE=3 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial rho gtpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_170 0.0 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
2 Hb_002205_010 0.1862308106 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
3 Hb_005488_120 0.2179696314 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
4 Hb_006846_020 0.2216058415 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
5 Hb_005288_020 0.2237266998 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
6 Hb_000009_310 0.2244802534 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005400_040 0.2292133054 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
8 Hb_020400_040 0.2303824208 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
9 Hb_002110_240 0.2321486025 - - clathrin assembly protein, putative [Ricinus communis]
10 Hb_001472_130 0.2380761082 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
11 Hb_000503_010 0.2400525954 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
12 Hb_004712_170 0.2401247211 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
13 Hb_000179_240 0.2423631013 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
14 Hb_156850_080 0.2424177485 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
15 Hb_000976_290 0.2466887262 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
16 Hb_000160_240 0.2482715168 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
17 Hb_000038_040 0.248355281 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
18 Hb_000215_350 0.2551214105 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
19 Hb_000062_590 0.2561632193 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_008246_090 0.2565493647 - - -

Gene co-expression network

sample Hb_005276_170 Hb_005276_170 Hb_002205_010 Hb_002205_010 Hb_005276_170--Hb_002205_010 Hb_005488_120 Hb_005488_120 Hb_005276_170--Hb_005488_120 Hb_006846_020 Hb_006846_020 Hb_005276_170--Hb_006846_020 Hb_005288_020 Hb_005288_020 Hb_005276_170--Hb_005288_020 Hb_000009_310 Hb_000009_310 Hb_005276_170--Hb_000009_310 Hb_005400_040 Hb_005400_040 Hb_005276_170--Hb_005400_040 Hb_002110_240 Hb_002110_240 Hb_002205_010--Hb_002110_240 Hb_020400_040 Hb_020400_040 Hb_002205_010--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_000256_130 Hb_000256_130 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_001123_200 Hb_001123_200 Hb_002205_010--Hb_001123_200 Hb_000109_130 Hb_000109_130 Hb_005488_120--Hb_000109_130 Hb_000062_590 Hb_000062_590 Hb_005488_120--Hb_000062_590 Hb_000084_240 Hb_000084_240 Hb_005488_120--Hb_000084_240 Hb_001246_160 Hb_001246_160 Hb_005488_120--Hb_001246_160 Hb_000186_200 Hb_000186_200 Hb_005488_120--Hb_000186_200 Hb_002685_200 Hb_002685_200 Hb_005488_120--Hb_002685_200 Hb_000038_040 Hb_000038_040 Hb_006846_020--Hb_000038_040 Hb_002477_120 Hb_002477_120 Hb_006846_020--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_006846_020--Hb_007007_080 Hb_000107_440 Hb_000107_440 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_005288_020--Hb_005400_040 Hb_005288_020--Hb_006846_020 Hb_005539_020 Hb_005539_020 Hb_005288_020--Hb_005539_020 Hb_000802_190 Hb_000802_190 Hb_005288_020--Hb_000802_190 Hb_005288_020--Hb_000062_590 Hb_005288_020--Hb_002477_120 Hb_000975_330 Hb_000975_330 Hb_000009_310--Hb_000975_330 Hb_004460_040 Hb_004460_040 Hb_000009_310--Hb_004460_040 Hb_065500_040 Hb_065500_040 Hb_000009_310--Hb_065500_040 Hb_000086_610 Hb_000086_610 Hb_000009_310--Hb_000086_610 Hb_004787_100 Hb_004787_100 Hb_000009_310--Hb_004787_100 Hb_006538_030 Hb_006538_030 Hb_000009_310--Hb_006538_030 Hb_000997_110 Hb_000997_110 Hb_005400_040--Hb_000997_110 Hb_001863_150 Hb_001863_150 Hb_005400_040--Hb_001863_150 Hb_005400_040--Hb_005539_020 Hb_005147_040 Hb_005147_040 Hb_005400_040--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_005400_040--Hb_000976_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0446949 1.38221 0.519449 0.100465 0.0942177 0.141921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129108 0.474077 0.0964304 0.3636 0

CAGE analysis