Hb_005276_210

Information

Type -
Description -
Location Contig5276: 212598-218636
Sequence    

Annotation

kegg
ID rcu:RCOM_0558550
description DNA repair helicase rad3/xp-d, putative
nr
ID XP_012092547.1
description PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
swissprot
ID Q8W4M7
description DNA repair helicase UVH6 OS=Arabidopsis thaliana GN=UVH6 PE=1 SV=1
trembl
ID A0A067JKA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05295 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna repair helicase uvh6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47106: 212771-215101 , PASA_asmbl_47108: 215162-218544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_210 0.0 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
2 Hb_000034_100 0.0517920078 - - dnajc14 protein, putative [Ricinus communis]
3 Hb_054865_100 0.0550793861 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
4 Hb_000300_060 0.0589516634 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
5 Hb_002477_280 0.05929042 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
6 Hb_066182_010 0.059381033 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
7 Hb_003952_070 0.0621617953 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000853_170 0.0641255779 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
9 Hb_005694_110 0.0643833125 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
10 Hb_000051_070 0.0658670597 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_005245_130 0.0662953623 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
12 Hb_008406_110 0.0663606534 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
13 Hb_000038_170 0.0666288726 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
14 Hb_004310_150 0.0684016365 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
15 Hb_003010_030 0.0715174106 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
16 Hb_075481_030 0.0716309492 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
17 Hb_001006_140 0.0716368875 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
18 Hb_005618_160 0.073591751 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
19 Hb_000926_190 0.0771928275 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
20 Hb_000116_180 0.0772950659 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005276_210 Hb_005276_210 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_000487_110 Hb_000487_110 Hb_000034_100--Hb_000487_110 Hb_005694_110 Hb_005694_110 Hb_000034_100--Hb_005694_110 Hb_000096_070 Hb_000096_070 Hb_000034_100--Hb_000096_070 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_054865_100--Hb_066182_010 Hb_006620_020 Hb_006620_020 Hb_054865_100--Hb_006620_020 Hb_000327_120 Hb_000327_120 Hb_054865_100--Hb_000327_120 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_000300_060--Hb_066182_010 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030 Hb_000085_160 Hb_000085_160 Hb_002477_280--Hb_000085_160 Hb_004310_150 Hb_004310_150 Hb_002477_280--Hb_004310_150 Hb_003952_090 Hb_003952_090 Hb_002477_280--Hb_003952_090 Hb_003525_010 Hb_003525_010 Hb_002477_280--Hb_003525_010 Hb_002477_280--Hb_000300_060 Hb_066182_010--Hb_002081_130 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8436 12.8494 7.37951 7.80583 23.4721 18.2107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0057 17.9861 10.6957 11.0686 8.19284

CAGE analysis