Hb_005278_040

Information

Type -
Description -
Location Contig5278: 58448-60746
Sequence    

Annotation

kegg
ID csv:101211585
description sorcin-like
nr
ID XP_011040785.1
description PREDICTED: sorcin-like isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0A0KAX1
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118890 PE=4 SV=1
Gene Ontology
ID GO:0005509
description sorcin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47128: 32127-59801 , PASA_asmbl_47131: 58581-58757 , PASA_asmbl_47133: 32127-60867
cDNA
(Sanger)
(ID:Location)		 023_C22.ab1: 32167-59703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005278_040 0.0 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
2 Hb_000417_260 0.0570252417 - - protein with unknown function [Ricinus communis]
3 Hb_001008_090 0.073763881 - - cytochrome C oxidase, putative [Ricinus communis]
4 Hb_002324_010 0.0884086772 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_000384_120 0.0894714406 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_000056_250 0.0899273247 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
7 Hb_138585_040 0.0904690206 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
8 Hb_001172_100 0.0933115429 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
9 Hb_000292_060 0.0936744113 - - transporter, putative [Ricinus communis]
10 Hb_068056_030 0.0938135526 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
11 Hb_006569_100 0.0953274653 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
12 Hb_001005_080 0.0960368029 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
13 Hb_001314_040 0.0967464094 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
14 Hb_020419_020 0.0986941779 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_004659_060 0.1003611154 - - RAS-related GTP-binding family protein [Populus trichocarpa]
16 Hb_023344_050 0.1051098544 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
17 Hb_005663_120 0.1060273788 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
18 Hb_000096_150 0.1068124597 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
19 Hb_005527_040 0.107037613 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
20 Hb_000320_330 0.1070963233 - - uncharacterized protein LOC100527884 [Glycine max]

Gene co-expression network

sample Hb_005278_040 Hb_005278_040 Hb_000417_260 Hb_000417_260 Hb_005278_040--Hb_000417_260 Hb_001008_090 Hb_001008_090 Hb_005278_040--Hb_001008_090 Hb_002324_010 Hb_002324_010 Hb_005278_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_005278_040--Hb_000384_120 Hb_000056_250 Hb_000056_250 Hb_005278_040--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005278_040--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_005045_070 Hb_005045_070 Hb_002324_010--Hb_005045_070 Hb_002324_010--Hb_000384_120 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_002324_010--Hb_138585_040 Hb_000384_120--Hb_072922_020 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_000096_150 Hb_000096_150 Hb_000056_250--Hb_000096_150 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_027751_060 Hb_027751_060 Hb_000056_250--Hb_027751_060 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010 Hb_000049_050 Hb_000049_050 Hb_138585_040--Hb_000049_050 Hb_138585_040--Hb_001172_100 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43638 1.15801 3.6304 9.2667 1.56971 3.66399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9972 19.132 15.5343 5.70088 4.07896

CAGE analysis