Hb_005280_010

Information

Type -
Description -
Location Contig5280: 62023-69634
Sequence    

Annotation

kegg
ID rcu:RCOM_0865180
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012074654.1
description PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
swissprot
ID O82302
description Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2
trembl
ID A0A067KI82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10616 PE=4 SV=1
Gene Ontology
ID GO:0004721
description protein phosphatase 2c 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47136: 61926-69613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005280_010 0.0 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
2 Hb_000236_250 0.089740619 - - conserved hypothetical protein [Ricinus communis]
3 Hb_049675_010 0.1065265497 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_071736_010 0.1151618976 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
5 Hb_000122_130 0.1163038079 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011310_070 0.1198835906 - - ADP,ATP carrier protein, putative [Ricinus communis]
7 Hb_000139_380 0.1202103664 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001017_040 0.1209309651 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
9 Hb_000446_090 0.1241911767 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
10 Hb_005754_060 0.1252477916 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004440_100 0.1272533634 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
12 Hb_010436_030 0.1273465619 - - Ribonuclease III, putative [Ricinus communis]
13 Hb_011318_010 0.1290495331 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
14 Hb_014568_030 0.1295474736 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
15 Hb_011287_090 0.132794377 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
16 Hb_005883_050 0.1342342535 - - PREDICTED: transportin-3 [Jatropha curcas]
17 Hb_001673_010 0.1345323571 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
18 Hb_010436_020 0.1346612335 - - Dicer-like protein 4 [Morus notabilis]
19 Hb_001266_080 0.1351907827 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
20 Hb_012286_050 0.1352782375 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_005280_010 Hb_005280_010 Hb_000236_250 Hb_000236_250 Hb_005280_010--Hb_000236_250 Hb_049675_010 Hb_049675_010 Hb_005280_010--Hb_049675_010 Hb_071736_010 Hb_071736_010 Hb_005280_010--Hb_071736_010 Hb_000122_130 Hb_000122_130 Hb_005280_010--Hb_000122_130 Hb_011310_070 Hb_011310_070 Hb_005280_010--Hb_011310_070 Hb_000139_380 Hb_000139_380 Hb_005280_010--Hb_000139_380 Hb_001584_110 Hb_001584_110 Hb_000236_250--Hb_001584_110 Hb_014568_030 Hb_014568_030 Hb_000236_250--Hb_014568_030 Hb_002890_340 Hb_002890_340 Hb_000236_250--Hb_002890_340 Hb_185467_020 Hb_185467_020 Hb_000236_250--Hb_185467_020 Hb_001017_040 Hb_001017_040 Hb_000236_250--Hb_001017_040 Hb_049675_010--Hb_000122_130 Hb_010436_020 Hb_010436_020 Hb_049675_010--Hb_010436_020 Hb_012490_040 Hb_012490_040 Hb_049675_010--Hb_012490_040 Hb_034271_030 Hb_034271_030 Hb_049675_010--Hb_034271_030 Hb_049675_010--Hb_002890_340 Hb_005883_050 Hb_005883_050 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010 Hb_000122_130--Hb_010436_020 Hb_000122_130--Hb_012490_040 Hb_000122_130--Hb_002890_340 Hb_012395_190 Hb_012395_190 Hb_000122_130--Hb_012395_190 Hb_009111_050 Hb_009111_050 Hb_011310_070--Hb_009111_050 Hb_006788_070 Hb_006788_070 Hb_011310_070--Hb_006788_070 Hb_001454_210 Hb_001454_210 Hb_011310_070--Hb_001454_210 Hb_008066_010 Hb_008066_010 Hb_011310_070--Hb_008066_010 Hb_000029_030 Hb_000029_030 Hb_011310_070--Hb_000029_030 Hb_011310_070--Hb_071736_010 Hb_006935_050 Hb_006935_050 Hb_000139_380--Hb_006935_050 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_011287_090 Hb_011287_090 Hb_000139_380--Hb_011287_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3047 1.94405 2.03058 4.06599 11.0758 23.6855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0621 5.08837 19.2272 7.45609 6.58347

CAGE analysis