Hb_005282_010

Information

Type -
Description -
Location Contig5282: 10445-13721
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11490g
description POPTRDRAFT_816437; glycosyl transferase family 2 family protein
nr
ID XP_011008398.1
description PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
swissprot
ID Q9ZQB9
description Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1
trembl
ID L0ASJ1
description Cellulose synthase-like protein OS=Populus tomentosa PE=4 SV=1
Gene Ontology
ID GO:0009506
description probable xyloglucan glycosyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47139: 10412-13777 , PASA_asmbl_47140: 10238-13796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005282_010 0.0 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
2 Hb_001405_060 0.0553094222 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
3 Hb_002234_200 0.0838156192 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
4 Hb_000373_250 0.1019470436 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
5 Hb_003633_150 0.1034141731 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
6 Hb_002849_110 0.1070840168 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
7 Hb_098160_010 0.11573897 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_007441_150 0.1168170899 - - Ankyrin repeat family protein [Theobroma cacao]
9 Hb_001247_160 0.1180461884 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
10 Hb_002936_030 0.1196847362 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
11 Hb_008948_110 0.1215295621 - - PREDICTED: peroxidase 25 [Jatropha curcas]
12 Hb_000024_020 0.123100886 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
13 Hb_009476_110 0.124288749 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
14 Hb_000567_110 0.127349755 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
15 Hb_000988_020 0.133007182 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
16 Hb_001189_150 0.1350362636 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
17 Hb_010142_040 0.1355248559 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
18 Hb_007120_010 0.1365084888 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
19 Hb_029238_020 0.1373878569 - - PREDICTED: expansin-like A1 [Jatropha curcas]
20 Hb_004112_050 0.1384244468 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_005282_010 Hb_005282_010 Hb_001405_060 Hb_001405_060 Hb_005282_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_005282_010--Hb_002234_200 Hb_000373_250 Hb_000373_250 Hb_005282_010--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_005282_010--Hb_003633_150 Hb_002849_110 Hb_002849_110 Hb_005282_010--Hb_002849_110 Hb_098160_010 Hb_098160_010 Hb_005282_010--Hb_098160_010 Hb_001405_060--Hb_002234_200 Hb_001405_060--Hb_098160_010 Hb_001405_060--Hb_002849_110 Hb_001405_060--Hb_000373_250 Hb_001405_060--Hb_003633_150 Hb_013607_010 Hb_013607_010 Hb_002234_200--Hb_013607_010 Hb_000363_110 Hb_000363_110 Hb_002234_200--Hb_000363_110 Hb_008948_110 Hb_008948_110 Hb_002234_200--Hb_008948_110 Hb_002234_200--Hb_098160_010 Hb_007120_010 Hb_007120_010 Hb_000373_250--Hb_007120_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_000373_250--Hb_002849_110 Hb_009476_110 Hb_009476_110 Hb_003633_150--Hb_009476_110 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_182970_010 Hb_182970_010 Hb_003633_150--Hb_182970_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_000836_210 Hb_000836_210 Hb_002849_110--Hb_000836_210 Hb_000087_100 Hb_000087_100 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_098160_010--Hb_000363_110 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80753 65.1229 24.19 34.8673 0.946836 0.433139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.877976 1.05517 0.887679 5.25918 8.37433

CAGE analysis