Hb_005282_020

Information

Type -
Description -
Location Contig5282: 15882-24510
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019056mg
description hypothetical protein
nr
ID XP_007206484.1
description hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WEH8
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019056mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47141: 16074-23156 , PASA_asmbl_47143: 19789-19896 , PASA_asmbl_47144: 24465-38794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005282_020 0.0 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
2 Hb_003544_010 0.1004687172 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000676_200 0.1073178373 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
4 Hb_000012_160 0.1085677459 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
5 Hb_000608_170 0.1091434998 - - F23N19.4 [Arabidopsis thaliana]
6 Hb_002685_060 0.1120589436 - - 30S ribosomal protein S5, putative [Ricinus communis]
7 Hb_000318_130 0.1141300669 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000928_010 0.1175200132 - - Cell division protein ftsZ, putative [Ricinus communis]
9 Hb_001824_090 0.1201915158 - - -
10 Hb_003994_110 0.1217815834 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
11 Hb_003475_020 0.1234139684 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
12 Hb_002660_190 0.1283451005 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
13 Hb_011386_020 0.1303176156 - - unnamed protein product [Vitis vinifera]
14 Hb_001427_040 0.1310356898 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
15 Hb_002282_070 0.1312953577 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
16 Hb_016461_030 0.1322069431 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_002374_250 0.1322660877 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001138_060 0.1368715371 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
19 Hb_002518_120 0.1412543255 - - hypothetical protein RCOM_0731250 [Ricinus communis]
20 Hb_003878_080 0.1437270675 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]

Gene co-expression network

sample Hb_005282_020 Hb_005282_020 Hb_003544_010 Hb_003544_010 Hb_005282_020--Hb_003544_010 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_000012_160 Hb_000012_160 Hb_005282_020--Hb_000012_160 Hb_000608_170 Hb_000608_170 Hb_005282_020--Hb_000608_170 Hb_002685_060 Hb_002685_060 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_003994_110 Hb_003994_110 Hb_003544_010--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003544_010--Hb_011386_020 Hb_001824_090 Hb_001824_090 Hb_003544_010--Hb_001824_090 Hb_003544_010--Hb_000012_160 Hb_003475_020 Hb_003475_020 Hb_003544_010--Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070 Hb_000928_010 Hb_000928_010 Hb_000608_170--Hb_000928_010 Hb_000462_090 Hb_000462_090 Hb_000608_170--Hb_000462_090 Hb_000608_170--Hb_002685_060 Hb_114310_110 Hb_114310_110 Hb_000608_170--Hb_114310_110 Hb_000340_150 Hb_000340_150 Hb_000608_170--Hb_000340_150 Hb_003777_020 Hb_003777_020 Hb_002685_060--Hb_003777_020 Hb_002685_060--Hb_002282_070 Hb_016461_030 Hb_016461_030 Hb_002685_060--Hb_016461_030 Hb_007054_070 Hb_007054_070 Hb_002685_060--Hb_007054_070 Hb_000661_090 Hb_000661_090 Hb_002685_060--Hb_000661_090 Hb_005276_010 Hb_005276_010 Hb_002685_060--Hb_005276_010 Hb_004375_050 Hb_004375_050 Hb_000318_130--Hb_004375_050 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_005147_080 Hb_005147_080 Hb_000318_130--Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_000318_130--Hb_002290_030 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362323 0.277441 0.726577 0.393331 0.450718 0.561886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.585508 0.575641 0.990859 0.709394 2.91104

CAGE analysis