Hb_005288_020

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig5288: 8460-8942
Sequence    

Annotation

kegg
ID rcu:RCOM_0609810
description transcription factor, putative
nr
ID XP_002521997.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FRL5
description Zinc-finger homeodomain protein 5 OS=Arabidopsis thaliana GN=ZHD5 PE=1 SV=1
trembl
ID B9S7M8
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0609810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47154: 9169-9465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_020 0.0 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
2 Hb_005400_040 0.1551255735 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
3 Hb_006846_020 0.1647443569 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
4 Hb_005539_020 0.1744720583 - - -
5 Hb_000802_190 0.1799616363 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
6 Hb_000062_590 0.1812696365 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_002477_120 0.1831095087 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
8 Hb_000107_440 0.1955379637 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
9 Hb_001863_150 0.1988069979 - - VQ motif-containing family protein [Populus trichocarpa]
10 Hb_007007_080 0.1988367205 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004899_330 0.2024366436 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
12 Hb_002471_140 0.2029103337 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
13 Hb_003224_030 0.2031865921 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
14 Hb_011716_050 0.2034183014 - - serine acetyltransferase [Hevea brasiliensis]
15 Hb_174829_020 0.2049168042 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
16 Hb_000866_090 0.2060330229 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
17 Hb_000084_240 0.2063856295 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
18 Hb_089032_010 0.2095517889 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
19 Hb_003125_020 0.2099464538 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
20 Hb_000512_010 0.2112528401 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_020 Hb_005288_020 Hb_005400_040 Hb_005400_040 Hb_005288_020--Hb_005400_040 Hb_006846_020 Hb_006846_020 Hb_005288_020--Hb_006846_020 Hb_005539_020 Hb_005539_020 Hb_005288_020--Hb_005539_020 Hb_000802_190 Hb_000802_190 Hb_005288_020--Hb_000802_190 Hb_000062_590 Hb_000062_590 Hb_005288_020--Hb_000062_590 Hb_002477_120 Hb_002477_120 Hb_005288_020--Hb_002477_120 Hb_000997_110 Hb_000997_110 Hb_005400_040--Hb_000997_110 Hb_001863_150 Hb_001863_150 Hb_005400_040--Hb_001863_150 Hb_005400_040--Hb_005539_020 Hb_005147_040 Hb_005147_040 Hb_005400_040--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_005400_040--Hb_000976_290 Hb_000038_040 Hb_000038_040 Hb_006846_020--Hb_000038_040 Hb_006846_020--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_006846_020--Hb_007007_080 Hb_000107_440 Hb_000107_440 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_000062_080 Hb_000062_080 Hb_000802_190--Hb_000062_080 Hb_000802_190--Hb_002477_120 Hb_127599_010 Hb_127599_010 Hb_000802_190--Hb_127599_010 Hb_000866_090 Hb_000866_090 Hb_000802_190--Hb_000866_090 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_003125_020 Hb_003125_020 Hb_000802_190--Hb_003125_020 Hb_001085_300 Hb_001085_300 Hb_000062_590--Hb_001085_300 Hb_001195_350 Hb_001195_350 Hb_000062_590--Hb_001195_350 Hb_000000_340 Hb_000000_340 Hb_000062_590--Hb_000000_340 Hb_004899_330 Hb_004899_330 Hb_000062_590--Hb_004899_330 Hb_000866_140 Hb_000866_140 Hb_000062_590--Hb_000866_140 Hb_005488_120 Hb_005488_120 Hb_000062_590--Hb_005488_120 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.570788 4.5193 2.16864 0.400838 0.407437 0.163525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426435 0.558318 0.751148 2.00287 0.207097

CAGE analysis