Hb_005288_080

Information

Type -
Description -
Location Contig5288: 46048-51137
Sequence    

Annotation

kegg
ID rcu:RCOM_0609720
description hypothetical protein
nr
ID XP_002521990.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M841
description Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12 PE=1 SV=2
trembl
ID B9S7M1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609720 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisome biogenesis protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47164: 38956-45065 , PASA_asmbl_47168: 46072-48187 , PASA_asmbl_47169: 48275-49124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000922_020 0.0656445704 - - protein binding protein, putative [Ricinus communis]
3 Hb_000525_100 0.0681784469 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
4 Hb_000679_340 0.0770648587 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
5 Hb_000264_070 0.0819649635 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
6 Hb_001077_030 0.0821749851 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
7 Hb_000156_160 0.0826800199 - - PREDICTED: urease accessory protein G [Jatropha curcas]
8 Hb_001405_190 0.0829781015 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
9 Hb_000023_320 0.0830563022 - - conserved hypothetical protein [Ricinus communis]
10 Hb_032202_080 0.0836132499 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_001636_050 0.0871326083 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
12 Hb_000139_190 0.0893305838 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
13 Hb_011918_050 0.0909912187 - - -
14 Hb_002739_130 0.0910412703 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
15 Hb_000230_430 0.0910622758 - - catalytic, putative [Ricinus communis]
16 Hb_001952_120 0.0924857704 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
17 Hb_000599_080 0.0933240094 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
18 Hb_002814_110 0.0940462659 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
19 Hb_001301_220 0.0945790752 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
20 Hb_055235_020 0.0955947395 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_080 Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_005288_080--Hb_000922_020 Hb_000525_100 Hb_000525_100 Hb_005288_080--Hb_000525_100 Hb_000679_340 Hb_000679_340 Hb_005288_080--Hb_000679_340 Hb_000264_070 Hb_000264_070 Hb_005288_080--Hb_000264_070 Hb_001077_030 Hb_001077_030 Hb_005288_080--Hb_001077_030 Hb_000156_160 Hb_000156_160 Hb_005288_080--Hb_000156_160 Hb_001405_190 Hb_001405_190 Hb_000922_020--Hb_001405_190 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_032202_080 Hb_032202_080 Hb_000922_020--Hb_032202_080 Hb_000922_020--Hb_001077_030 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_000525_100--Hb_032202_080 Hb_000525_100--Hb_000679_340 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_002477_250 Hb_002477_250 Hb_000264_070--Hb_002477_250 Hb_000023_320 Hb_000023_320 Hb_000264_070--Hb_000023_320 Hb_000264_070--Hb_001405_190 Hb_001231_090 Hb_001231_090 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_002092_100 Hb_002092_100 Hb_000156_160--Hb_002092_100 Hb_000156_160--Hb_000922_020 Hb_016734_090 Hb_016734_090 Hb_000156_160--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_000156_160--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_000156_160--Hb_011918_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1647 17.6051 20.1669 10.6881 18.8024 12.839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.51532 6.85842 4.2008 6.38985 11.0624

CAGE analysis