Hb_005288_090

Information

Type -
Description -
Location Contig5288: 51335-53019
Sequence    

Annotation

kegg
ID rcu:RCOM_0609610
description hypothetical protein
nr
ID XP_012089357.1
description PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23557 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47171: 52418-53094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_090 0.0 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
2 Hb_012395_040 0.0617040631 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000340_550 0.0656941461 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
4 Hb_001257_070 0.0689822669 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
5 Hb_000060_030 0.0711803433 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
6 Hb_005618_070 0.0718453479 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
7 Hb_000116_050 0.0746472736 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
8 Hb_001541_140 0.0791995303 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
9 Hb_001279_110 0.0808095068 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
10 Hb_002928_150 0.0830943939 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
11 Hb_181744_010 0.0832222809 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_003777_260 0.0848643861 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
13 Hb_001998_180 0.0856508459 - - actin binding protein, putative [Ricinus communis]
14 Hb_001969_120 0.0874408686 - - PREDICTED: plectin [Jatropha curcas]
15 Hb_005116_120 0.0894333175 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
16 Hb_003776_050 0.0953977287 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
17 Hb_002053_100 0.09689557 - - actin binding protein, putative [Ricinus communis]
18 Hb_009113_060 0.0982600342 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005914_100 0.0992030581 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001439_240 0.0999159218 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]

Gene co-expression network

sample Hb_005288_090 Hb_005288_090 Hb_012395_040 Hb_012395_040 Hb_005288_090--Hb_012395_040 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_001257_070 Hb_001257_070 Hb_005288_090--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_005288_090--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_005288_090--Hb_005618_070 Hb_000116_050 Hb_000116_050 Hb_005288_090--Hb_000116_050 Hb_012395_040--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_012395_040--Hb_001279_110 Hb_012395_040--Hb_005618_070 Hb_012395_040--Hb_001257_070 Hb_012395_040--Hb_000060_030 Hb_003777_260 Hb_003777_260 Hb_000340_550--Hb_003777_260 Hb_001439_240 Hb_001439_240 Hb_000340_550--Hb_001439_240 Hb_181744_010 Hb_181744_010 Hb_000340_550--Hb_181744_010 Hb_002053_100 Hb_002053_100 Hb_000340_550--Hb_002053_100 Hb_005116_120 Hb_005116_120 Hb_000340_550--Hb_005116_120 Hb_034420_010 Hb_034420_010 Hb_001257_070--Hb_034420_010 Hb_008226_050 Hb_008226_050 Hb_001257_070--Hb_008226_050 Hb_001257_070--Hb_005618_070 Hb_072620_010 Hb_072620_010 Hb_001257_070--Hb_072620_010 Hb_000060_030--Hb_000116_050 Hb_000060_030--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_000060_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_000060_030--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_000060_030--Hb_002928_150 Hb_001969_120 Hb_001969_120 Hb_005618_070--Hb_001969_120 Hb_005618_070--Hb_001279_110 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_000116_050--Hb_001279_110 Hb_009113_060 Hb_009113_060 Hb_000116_050--Hb_009113_060 Hb_000116_050--Hb_001998_180 Hb_000116_050--Hb_002928_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0562197 5.5092 2.19073 0.0288404 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.253945 0.575224

CAGE analysis