Hb_005288_140

Information

Type -
Description -
Location Contig5288: 86916-96688
Sequence    

Annotation

kegg
ID rcu:RCOM_0609450
description calcium ion binding protein, putative
nr
ID XP_012089346.1
description PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
swissprot
ID Q5QIT3
description Serine/threonine protein phosphatase 2A regulatory subunit B''beta OS=Arabidopsis thaliana GN=B''BETA PE=1 SV=1
trembl
ID A0A067JUS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23553 PE=4 SV=1
Gene Ontology
ID GO:0005509
description serine threonine protein phosphatase 2a regulatory subunit b beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47188: 87007-97025 , PASA_asmbl_47189: 86890-96933 , PASA_asmbl_47190: 86890-96933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_140 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
2 Hb_004319_050 0.0520882091 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
3 Hb_000866_450 0.0604148029 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_026198_060 0.0691511902 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
5 Hb_000174_150 0.0712032496 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
6 Hb_005403_010 0.0733140619 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
7 Hb_033152_090 0.0745527756 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
8 Hb_001699_010 0.0748770839 - - drought-inducible protein [Manihot esculenta]
9 Hb_010287_020 0.0755600286 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
10 Hb_000977_300 0.075645278 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
11 Hb_000640_190 0.0763396865 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
12 Hb_000529_060 0.0763892823 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
13 Hb_000649_250 0.0763927116 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
14 Hb_002903_140 0.0770820496 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
15 Hb_001257_100 0.0797597294 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
16 Hb_000110_350 0.0811330302 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
17 Hb_005305_100 0.081966782 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_000809_160 0.082174943 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
19 Hb_001259_110 0.0822264002 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
20 Hb_000120_910 0.082490237 - - plant ubiquilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_005288_140 Hb_005288_140 Hb_004319_050 Hb_004319_050 Hb_005288_140--Hb_004319_050 Hb_000866_450 Hb_000866_450 Hb_005288_140--Hb_000866_450 Hb_026198_060 Hb_026198_060 Hb_005288_140--Hb_026198_060 Hb_000174_150 Hb_000174_150 Hb_005288_140--Hb_000174_150 Hb_005403_010 Hb_005403_010 Hb_005288_140--Hb_005403_010 Hb_033152_090 Hb_033152_090 Hb_005288_140--Hb_033152_090 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_000809_160 Hb_000809_160 Hb_000866_450--Hb_000809_160 Hb_000094_090 Hb_000094_090 Hb_000866_450--Hb_000094_090 Hb_102438_030 Hb_102438_030 Hb_000866_450--Hb_102438_030 Hb_001245_050 Hb_001245_050 Hb_000866_450--Hb_001245_050 Hb_000723_110 Hb_000723_110 Hb_000866_450--Hb_000723_110 Hb_000649_250 Hb_000649_250 Hb_026198_060--Hb_000649_250 Hb_022425_060 Hb_022425_060 Hb_026198_060--Hb_022425_060 Hb_001257_100 Hb_001257_100 Hb_026198_060--Hb_001257_100 Hb_004517_020 Hb_004517_020 Hb_026198_060--Hb_004517_020 Hb_001259_120 Hb_001259_120 Hb_026198_060--Hb_001259_120 Hb_001584_350 Hb_001584_350 Hb_000174_150--Hb_001584_350 Hb_000977_300 Hb_000977_300 Hb_000174_150--Hb_000977_300 Hb_000139_320 Hb_000139_320 Hb_000174_150--Hb_000139_320 Hb_001171_030 Hb_001171_030 Hb_000174_150--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000174_150--Hb_000340_030 Hb_170077_010 Hb_170077_010 Hb_005403_010--Hb_170077_010 Hb_000046_600 Hb_000046_600 Hb_005403_010--Hb_000046_600 Hb_023344_140 Hb_023344_140 Hb_005403_010--Hb_023344_140 Hb_000640_190 Hb_000640_190 Hb_005403_010--Hb_000640_190 Hb_000110_350 Hb_000110_350 Hb_005403_010--Hb_000110_350 Hb_000260_760 Hb_000260_760 Hb_005403_010--Hb_000260_760 Hb_033152_090--Hb_000640_190 Hb_000258_420 Hb_000258_420 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0236 36.4758 28.323 25.0721 12.2144 12.1048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.598 10.038 8.13787 15.9336 15.4752

CAGE analysis