Hb_005288_150

Information

Type -
Description -
Location Contig5288: 98203-104424
Sequence    

Annotation

kegg
ID rcu:RCOM_0609440
description casein kinase, putative
nr
ID XP_012089343.1
description PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID B9S7L3
description Casein kinase, putative OS=Ricinus communis GN=RCOM_0609440 PE=4 SV=1
Gene Ontology
ID GO:0004672
description casein kinase i-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47192: 98199-98777 , PASA_asmbl_47193: 99198-99356 , PASA_asmbl_47194: 102406-102616 , PASA_asmbl_47195: 104614-104777 , PASA_asmbl_47197: 105341-105529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_150 0.0 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
2 Hb_000260_100 0.0448829374 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000141_250 0.0571875477 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
4 Hb_020367_050 0.0648077747 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_002997_080 0.0673663899 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
6 Hb_002639_150 0.0679986508 - - -
7 Hb_001329_130 0.0700577388 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000390_170 0.0717281462 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
9 Hb_000926_310 0.0732963675 - - uncharacterized protein LOC100500241 [Glycine max]
10 Hb_012725_070 0.0764762499 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
11 Hb_000230_560 0.0765122925 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
12 Hb_007982_080 0.0801089434 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
13 Hb_003813_040 0.0801773531 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
14 Hb_000661_140 0.0804487165 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
15 Hb_006960_050 0.0807954281 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
16 Hb_008511_130 0.0817936065 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
17 Hb_003020_010 0.0827861116 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
18 Hb_000392_230 0.0828687503 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004007_220 0.0843777587 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
20 Hb_000236_240 0.0847107392 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]

Gene co-expression network

sample Hb_005288_150 Hb_005288_150 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_020367_050 Hb_020367_050 Hb_005288_150--Hb_020367_050 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_008511_130 Hb_008511_130 Hb_000141_250--Hb_008511_130 Hb_000141_250--Hb_000230_560 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_001329_130 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_002997_080--Hb_000230_560 Hb_000883_020 Hb_000883_020 Hb_002997_080--Hb_000883_020 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_002639_150--Hb_000926_310 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_001329_130--Hb_000236_240 Hb_001329_130--Hb_006960_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4145 4.13978 10.2921 4.90308 8.62883 7.63369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89011 6.32498 5.98673 3.74951 4.0396

CAGE analysis