Hb_005288_160

Information

Type -
Description -
Location Contig5288: 104861-109789
Sequence    

Annotation

kegg
ID rcu:RCOM_0609430
description protein farnesyltransferase alpha subunit, putative
nr
ID XP_012089338.1
description PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
swissprot
ID A3KPW7
description Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Danio rerio GN=ptar1 PE=2 SV=1
trembl
ID A0A067JLR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23551 PE=4 SV=1
Gene Ontology
ID GO:0008318
description protein prenyltransferase alpha subunit repeat-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47196: 104896-105037 , PASA_asmbl_47198: 107545-108407 , PASA_asmbl_47200: 108435-109616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_160 0.0 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
2 Hb_000733_060 0.0713086186 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
3 Hb_003605_070 0.0757334003 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
4 Hb_023226_060 0.0763555719 - - unnamed protein product [Vitis vinifera]
5 Hb_128548_020 0.0764647092 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
6 Hb_002631_050 0.0846830102 - - membrane associated ring finger 1,8, putative [Ricinus communis]
7 Hb_003453_020 0.0856801193 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
8 Hb_000997_020 0.0858355322 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
9 Hb_002007_250 0.0860658416 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004096_170 0.0887129114 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
11 Hb_001741_140 0.0910562006 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
12 Hb_022256_040 0.0924213867 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
13 Hb_001623_580 0.0924685631 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
14 Hb_182026_010 0.0931355067 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
15 Hb_005928_060 0.0942346886 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
16 Hb_000012_090 0.095700536 - - 3'-5' exonuclease, putative [Ricinus communis]
17 Hb_000340_510 0.0963993356 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
18 Hb_002276_190 0.0972853959 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
19 Hb_000322_050 0.0973201925 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
20 Hb_005527_050 0.0978343326 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_160 Hb_005288_160 Hb_000733_060 Hb_000733_060 Hb_005288_160--Hb_000733_060 Hb_003605_070 Hb_003605_070 Hb_005288_160--Hb_003605_070 Hb_023226_060 Hb_023226_060 Hb_005288_160--Hb_023226_060 Hb_128548_020 Hb_128548_020 Hb_005288_160--Hb_128548_020 Hb_002631_050 Hb_002631_050 Hb_005288_160--Hb_002631_050 Hb_003453_020 Hb_003453_020 Hb_005288_160--Hb_003453_020 Hb_000733_060--Hb_023226_060 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_000209_090 Hb_000209_090 Hb_003605_070--Hb_000209_090 Hb_001623_580 Hb_001623_580 Hb_003605_070--Hb_001623_580 Hb_001016_060 Hb_001016_060 Hb_003605_070--Hb_001016_060 Hb_002276_190 Hb_002276_190 Hb_003605_070--Hb_002276_190 Hb_000847_070 Hb_000847_070 Hb_003605_070--Hb_000847_070 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_023226_060--Hb_000768_030 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_128548_020--Hb_023226_060 Hb_128548_020--Hb_001623_580 Hb_128548_020--Hb_000733_060 Hb_128548_020--Hb_002276_190 Hb_001341_040 Hb_001341_040 Hb_128548_020--Hb_001341_040 Hb_185467_020 Hb_185467_020 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_002631_050--Hb_022256_040 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5165 2.84687 2.27882 3.42656 22.1458 15.9155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00283 10.1765 8.39546 5.18725 1.81604

CAGE analysis