Hb_005288_170

Information

Type -
Description -
Location Contig5288: 110943-117823
Sequence    

Annotation

kegg
ID tcc:TCM_026186
description Pentatricopeptide repeat superfamily protein, putative
nr
ID XP_011036313.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
swissprot
ID Q9FRS4
description Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
trembl
ID A0A067JIG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23549 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g08610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47205: 114991-117774
cDNA
(Sanger)
(ID:Location)		 007_J24r.ab1: 112572-113340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
2 Hb_000705_170 0.0726735652 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
3 Hb_000049_260 0.080629313 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_004236_050 0.0844505924 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
5 Hb_000861_080 0.0850020614 - - PREDICTED: protein ELC-like [Jatropha curcas]
6 Hb_003929_280 0.0850717084 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
7 Hb_000454_130 0.0862565755 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
8 Hb_001089_050 0.0864878397 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
9 Hb_001258_020 0.0876058443 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
10 Hb_003142_030 0.088665066 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
11 Hb_000289_040 0.0889045977 - - Poly(A) polymerase alpha, putative [Ricinus communis]
12 Hb_002217_110 0.0889466669 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
13 Hb_000087_060 0.0929370724 - - protein transporter, putative [Ricinus communis]
14 Hb_000868_110 0.0944994487 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
15 Hb_002073_200 0.0948486096 - - Phosphatase 2A-2 [Theobroma cacao]
16 Hb_007590_020 0.0949580357 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
17 Hb_000076_160 0.0964188185 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
18 Hb_003682_030 0.0964647816 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
19 Hb_004324_110 0.0970159871 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
20 Hb_007035_050 0.0971848612 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_170 Hb_005288_170 Hb_000705_170 Hb_000705_170 Hb_005288_170--Hb_000705_170 Hb_000049_260 Hb_000049_260 Hb_005288_170--Hb_000049_260 Hb_004236_050 Hb_004236_050 Hb_005288_170--Hb_004236_050 Hb_000861_080 Hb_000861_080 Hb_005288_170--Hb_000861_080 Hb_003929_280 Hb_003929_280 Hb_005288_170--Hb_003929_280 Hb_000454_130 Hb_000454_130 Hb_005288_170--Hb_000454_130 Hb_013738_020 Hb_013738_020 Hb_000705_170--Hb_013738_020 Hb_000116_450 Hb_000116_450 Hb_000705_170--Hb_000116_450 Hb_000087_060 Hb_000087_060 Hb_000705_170--Hb_000087_060 Hb_000402_080 Hb_000402_080 Hb_000705_170--Hb_000402_080 Hb_002110_080 Hb_002110_080 Hb_000705_170--Hb_002110_080 Hb_020831_030 Hb_020831_030 Hb_000049_260--Hb_020831_030 Hb_002818_030 Hb_002818_030 Hb_000049_260--Hb_002818_030 Hb_002234_170 Hb_002234_170 Hb_000049_260--Hb_002234_170 Hb_001195_530 Hb_001195_530 Hb_000049_260--Hb_001195_530 Hb_002798_070 Hb_002798_070 Hb_000049_260--Hb_002798_070 Hb_013399_100 Hb_013399_100 Hb_000049_260--Hb_013399_100 Hb_004236_050--Hb_003929_280 Hb_004837_180 Hb_004837_180 Hb_004236_050--Hb_004837_180 Hb_000645_170 Hb_000645_170 Hb_004236_050--Hb_000645_170 Hb_003927_040 Hb_003927_040 Hb_004236_050--Hb_003927_040 Hb_007590_020 Hb_007590_020 Hb_004236_050--Hb_007590_020 Hb_012305_030 Hb_012305_030 Hb_004236_050--Hb_012305_030 Hb_001089_050 Hb_001089_050 Hb_000861_080--Hb_001089_050 Hb_000803_070 Hb_000803_070 Hb_000861_080--Hb_000803_070 Hb_003398_080 Hb_003398_080 Hb_000861_080--Hb_003398_080 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_000861_080--Hb_020831_030 Hb_003929_280--Hb_004837_180 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110 Hb_000454_130--Hb_000087_060 Hb_000454_130--Hb_001089_050 Hb_000454_130--Hb_003927_040 Hb_002492_010 Hb_002492_010 Hb_000454_130--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_000454_130--Hb_001716_020 Hb_002028_210 Hb_002028_210 Hb_000454_130--Hb_002028_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76325 13.9766 7.82067 8.24232 9.51483 8.16843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.642 10.2739 5.10683 4.05207 7.61351

CAGE analysis