Hb_005288_190

Information

Type -
Description -
Location Contig5288: 118225-123427
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03600g
description POPTRDRAFT_914545; hypothetical protein
nr
ID XP_012089331.1
description PREDICTED: exportin-4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23548 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47204: 117160-117645 , PASA_asmbl_47207: 122342-122814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_190 0.0 - - PREDICTED: exportin-4 [Jatropha curcas]
2 Hb_003688_130 0.0731441866 - - phosphoserine phosphatase, putative [Ricinus communis]
3 Hb_002311_180 0.0881951429 - - drought-responsive family protein [Populus trichocarpa]
4 Hb_002739_050 0.0900630388 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
5 Hb_005730_120 0.0927042479 - - PREDICTED: protein WHI4 [Jatropha curcas]
6 Hb_001416_010 0.0934563863 - - Thioredoxin H-type, putative [Ricinus communis]
7 Hb_001454_400 0.0947860105 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
8 Hb_000059_330 0.0948033357 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
9 Hb_002245_030 0.0984793306 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_003749_010 0.0985935153 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003428_030 0.0997675846 - - tRNA, putative [Ricinus communis]
12 Hb_002495_040 0.1024162321 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
13 Hb_002349_040 0.1030247306 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
14 Hb_007672_060 0.1031739017 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
15 Hb_001579_270 0.1035453515 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
16 Hb_001586_040 0.1045553277 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
17 Hb_054865_120 0.1051911924 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
18 Hb_001221_320 0.1051997716 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
19 Hb_005271_220 0.1065780054 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
20 Hb_002601_110 0.1070359298 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_190 Hb_005288_190 Hb_003688_130 Hb_003688_130 Hb_005288_190--Hb_003688_130 Hb_002311_180 Hb_002311_180 Hb_005288_190--Hb_002311_180 Hb_002739_050 Hb_002739_050 Hb_005288_190--Hb_002739_050 Hb_005730_120 Hb_005730_120 Hb_005288_190--Hb_005730_120 Hb_001416_010 Hb_001416_010 Hb_005288_190--Hb_001416_010 Hb_001454_400 Hb_001454_400 Hb_005288_190--Hb_001454_400 Hb_054865_120 Hb_054865_120 Hb_003688_130--Hb_054865_120 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_000025_470 Hb_000025_470 Hb_003688_130--Hb_000025_470 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_008748_040 Hb_008748_040 Hb_003688_130--Hb_008748_040 Hb_002311_180--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002311_180--Hb_005271_220 Hb_007416_300 Hb_007416_300 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_007885_060 Hb_007885_060 Hb_002311_180--Hb_007885_060 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100 Hb_003428_030 Hb_003428_030 Hb_002739_050--Hb_003428_030 Hb_002253_100 Hb_002253_100 Hb_002739_050--Hb_002253_100 Hb_000093_160 Hb_000093_160 Hb_002739_050--Hb_000093_160 Hb_005618_160 Hb_005618_160 Hb_002739_050--Hb_005618_160 Hb_007672_060 Hb_007672_060 Hb_002739_050--Hb_007672_060 Hb_001586_040 Hb_001586_040 Hb_002739_050--Hb_001586_040 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_001416_010--Hb_001454_400 Hb_007875_030 Hb_007875_030 Hb_001416_010--Hb_007875_030 Hb_002601_110 Hb_002601_110 Hb_001416_010--Hb_002601_110 Hb_003878_010 Hb_003878_010 Hb_001416_010--Hb_003878_010 Hb_003544_020 Hb_003544_020 Hb_001416_010--Hb_003544_020 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_001454_400--Hb_003878_010 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4053 11.5727 12.9827 15.6613 18.7466 16.9918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6938 20.5686 6.83791 8.61517 10.6557

CAGE analysis