Hb_005289_040

Information

Type -
Description -
Location Contig5289: 37409-45868
Sequence    

Annotation

kegg
ID rcu:RCOM_0261900
description poly(A) polymerase, putative (EC:2.7.7.25)
nr
ID XP_002533879.1
description poly(A) polymerase, putative [Ricinus communis]
swissprot
ID Q9P4S5
description CCA tRNA nucleotidyltransferase, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CCA1 PE=1 SV=2
trembl
ID B9T6L0
description Poly(A) polymerase, putative OS=Ricinus communis GN=RCOM_0261900 PE=3 SV=1
Gene Ontology
ID GO:0003723
description cca trna nucleotidyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47216: 37432-37794 , PASA_asmbl_47217: 38006-41204 , PASA_asmbl_47218: 42744-44122 , PASA_asmbl_47219: 45569-45784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005289_040 0.0 - - poly(A) polymerase, putative [Ricinus communis]
2 Hb_003638_090 0.0475672944 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
3 Hb_005588_090 0.0573701328 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
4 Hb_000398_080 0.0616782815 - - tip120, putative [Ricinus communis]
5 Hb_002805_190 0.0622098833 - - spliceosome associated protein, putative [Ricinus communis]
6 Hb_000134_270 0.0640622275 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
7 Hb_154580_010 0.0645288262 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
8 Hb_000603_030 0.0664056203 - - Ribonuclease III, putative [Ricinus communis]
9 Hb_001089_070 0.0671025251 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
10 Hb_000163_220 0.0678624764 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
11 Hb_128548_010 0.0681417101 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003861_050 0.0690436151 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
13 Hb_004994_010 0.0702313448 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
14 Hb_000089_120 0.0711334507 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_183612_040 0.071652109 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
16 Hb_008568_020 0.0718878101 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
17 Hb_002067_030 0.0720373229 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
18 Hb_016777_040 0.0722489598 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
19 Hb_002889_010 0.074112226 - - ubx domain-containing, putative [Ricinus communis]
20 Hb_001433_070 0.0750742909 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005289_040 Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005588_090 Hb_005588_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_001488_200 Hb_001488_200 Hb_003638_090--Hb_001488_200 Hb_019654_040 Hb_019654_040 Hb_003638_090--Hb_019654_040 Hb_003638_090--Hb_002805_190 Hb_002374_260 Hb_002374_260 Hb_003638_090--Hb_002374_260 Hb_005965_030 Hb_005965_030 Hb_003638_090--Hb_005965_030 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_003861_050 Hb_003861_050 Hb_002805_190--Hb_003861_050 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_001377_310 Hb_001377_310 Hb_002805_190--Hb_001377_310 Hb_000044_040 Hb_000044_040 Hb_000134_270--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000134_270--Hb_000318_120 Hb_002889_010 Hb_002889_010 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_154580_010--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_154580_010--Hb_003096_060 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09555 8.77093 11.9161 6.35527 10.1883 10.2588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.95066 5.93237 4.28434 10.7133 6.61351

CAGE analysis