Hb_005291_050

Information

Type -
Description -
Location Contig5291: 53232-57421
Sequence    

Annotation

kegg
ID rcu:RCOM_0670020
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_012072690.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
swissprot
ID Q0DCM5
description Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2
trembl
ID A0A067L125
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06458 PE=3 SV=1
Gene Ontology
ID GO:0004553
description mannan endo- -beta-mannosidase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47269: 53564-57383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005291_050 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
2 Hb_012498_010 0.0492515708 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
3 Hb_001902_030 0.0550402209 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
4 Hb_004109_080 0.055332245 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
5 Hb_000156_010 0.0578658667 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
6 Hb_002263_020 0.0632274733 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_000254_090 0.0636610785 - - PREDICTED: la protein 2 [Jatropha curcas]
8 Hb_054865_150 0.0644928658 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
9 Hb_006455_120 0.0647996296 - - n6-DNA-methyltransferase, putative [Ricinus communis]
10 Hb_001279_030 0.0655996195 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
11 Hb_011037_030 0.0681165967 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
12 Hb_003025_100 0.0683595447 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
13 Hb_001004_070 0.0685743855 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000260_350 0.0690477282 - - conserved hypothetical protein [Ricinus communis]
15 Hb_015807_050 0.0717454413 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
16 Hb_027380_220 0.0717649513 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
17 Hb_000213_010 0.0719333429 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
18 Hb_003683_020 0.0720015944 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_109980_010 0.0724383107 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
20 Hb_006634_070 0.0725819495 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_005291_050 Hb_005291_050 Hb_012498_010 Hb_012498_010 Hb_005291_050--Hb_012498_010 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_004109_080 Hb_004109_080 Hb_005291_050--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_005291_050--Hb_000156_010 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_001902_030--Hb_002263_020 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_000331_260 Hb_000331_260 Hb_001902_030--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_001902_030--Hb_004109_080 Hb_004109_080--Hb_004567_090 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_004109_080--Hb_002263_020 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200 Hb_011037_030 Hb_011037_030 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_054865_150 Hb_054865_150 Hb_000156_010--Hb_054865_150 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9833 11.7616 14.6357 22.403 17.1985 19.9827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8672 15.5573 20.5746 15.6242 20.8105

CAGE analysis