Hb_005293_020

Information

Type -
Description -
Location Contig5293: 21671-24276
Sequence    

Annotation

kegg
ID rcu:RCOM_0701460
description hypothetical protein
nr
ID XP_002523528.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SC09
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0701460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47270: 22550-24389
cDNA
(Sanger)
(ID:Location)		 006_O17.ab1: 22550-23401

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005293_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002217_280 0.128987805 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000281_060 0.212218834 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_000139_110 0.2293126922 - - PREDICTED: mavicyanin [Jatropha curcas]
5 Hb_034507_040 0.2434188716 - - peptide transporter, putative [Ricinus communis]
6 Hb_000226_070 0.2487046733 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
7 Hb_024074_020 0.2747476359 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
8 Hb_002046_150 0.2770608769 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
9 Hb_001486_050 0.2782645596 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
10 Hb_001474_040 0.2787952997 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
11 Hb_000300_520 0.280491374 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
12 Hb_001266_070 0.2818040378 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
13 Hb_007632_100 0.283779275 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
14 Hb_004225_110 0.2855208582 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
15 Hb_000116_140 0.2855999814 - - dihydrodipicolinate synthase, putative [Ricinus communis]
16 Hb_001367_010 0.2909893331 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
17 Hb_002783_250 0.2910624624 - - gibberellin-regulated protein 1-like precursor [Jatropha curcas]
18 Hb_001289_020 0.2940571874 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
19 Hb_054865_160 0.2940882471 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
20 Hb_004117_120 0.2947750402 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005293_020 Hb_005293_020 Hb_002217_280 Hb_002217_280 Hb_005293_020--Hb_002217_280 Hb_000281_060 Hb_000281_060 Hb_005293_020--Hb_000281_060 Hb_000139_110 Hb_000139_110 Hb_005293_020--Hb_000139_110 Hb_034507_040 Hb_034507_040 Hb_005293_020--Hb_034507_040 Hb_000226_070 Hb_000226_070 Hb_005293_020--Hb_000226_070 Hb_024074_020 Hb_024074_020 Hb_005293_020--Hb_024074_020 Hb_000100_060 Hb_000100_060 Hb_002217_280--Hb_000100_060 Hb_002217_280--Hb_034507_040 Hb_002217_280--Hb_000226_070 Hb_007810_090 Hb_007810_090 Hb_002217_280--Hb_007810_090 Hb_000300_520 Hb_000300_520 Hb_002217_280--Hb_000300_520 Hb_001474_040 Hb_001474_040 Hb_000281_060--Hb_001474_040 Hb_001266_070 Hb_001266_070 Hb_000281_060--Hb_001266_070 Hb_002498_050 Hb_002498_050 Hb_000281_060--Hb_002498_050 Hb_000281_060--Hb_024074_020 Hb_017014_010 Hb_017014_010 Hb_000281_060--Hb_017014_010 Hb_000281_060--Hb_034507_040 Hb_001486_050 Hb_001486_050 Hb_000139_110--Hb_001486_050 Hb_000500_070 Hb_000500_070 Hb_000139_110--Hb_000500_070 Hb_006816_110 Hb_006816_110 Hb_000139_110--Hb_006816_110 Hb_000139_110--Hb_034507_040 Hb_003713_010 Hb_003713_010 Hb_000139_110--Hb_003713_010 Hb_188313_010 Hb_188313_010 Hb_034507_040--Hb_188313_010 Hb_000311_040 Hb_000311_040 Hb_034507_040--Hb_000311_040 Hb_054865_160 Hb_054865_160 Hb_034507_040--Hb_054865_160 Hb_001217_010 Hb_001217_010 Hb_034507_040--Hb_001217_010 Hb_011287_040 Hb_011287_040 Hb_034507_040--Hb_011287_040 Hb_001247_030 Hb_001247_030 Hb_034507_040--Hb_001247_030 Hb_010812_110 Hb_010812_110 Hb_000226_070--Hb_010812_110 Hb_000226_070--Hb_001474_040 Hb_000300_230 Hb_000300_230 Hb_000226_070--Hb_000300_230 Hb_002129_020 Hb_002129_020 Hb_000226_070--Hb_002129_020 Hb_000226_070--Hb_000300_520 Hb_002046_150 Hb_002046_150 Hb_000226_070--Hb_002046_150 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.113 3.36519 13.0792 203.354 53.687 19.9238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.61308 0.679645 34.8826 2.2626 27.0606

CAGE analysis