Hb_005295_030

Information

Type -
Description -
Location Contig5295: 54823-55182
Sequence    

Annotation

kegg
ID rcu:RCOM_1685970
description hypothetical protein
nr
ID XP_012086485.1
description PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23937 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47276: 54569-54866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005295_030 0.0 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
2 Hb_002092_060 0.0678002548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006977_010 0.0694071837 - - unnamed protein product [Vitis vinifera]
4 Hb_004162_200 0.0733328372 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
5 Hb_015175_070 0.0756922995 - - cysteine protease, putative [Ricinus communis]
6 Hb_002309_020 0.076909178 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
7 Hb_004899_230 0.0786038063 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
8 Hb_000310_050 0.083442585 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_005614_060 0.083510348 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
10 Hb_093084_030 0.084236996 - - oleosin2 [Plukenetia volubilis]
11 Hb_029883_010 0.0843137179 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_000005_290 0.0844066738 - - Serine carboxypeptidase, putative [Ricinus communis]
13 Hb_004218_270 0.0858931454 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
14 Hb_002067_070 0.0876736331 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
15 Hb_050898_040 0.0884957724 - - -
16 Hb_002783_100 0.0905281412 - - Zeamatin precursor, putative [Ricinus communis]
17 Hb_000227_290 0.0934387445 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
18 Hb_000531_030 0.0946688197 - - conserved hypothetical protein [Ricinus communis]
19 Hb_132381_010 0.0972108941 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_006922_120 0.097504233 - - hypothetical protein JCGZ_01146 [Jatropha curcas]

Gene co-expression network

sample Hb_005295_030 Hb_005295_030 Hb_002092_060 Hb_002092_060 Hb_005295_030--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_004162_200 Hb_004162_200 Hb_005295_030--Hb_004162_200 Hb_015175_070 Hb_015175_070 Hb_005295_030--Hb_015175_070 Hb_002309_020 Hb_002309_020 Hb_005295_030--Hb_002309_020 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_002092_060--Hb_015175_070 Hb_002092_060--Hb_002309_020 Hb_000005_290 Hb_000005_290 Hb_002092_060--Hb_000005_290 Hb_000310_050 Hb_000310_050 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_006922_120 Hb_006922_120 Hb_006977_010--Hb_006922_120 Hb_010883_170 Hb_010883_170 Hb_006977_010--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_006977_010--Hb_007113_060 Hb_006977_010--Hb_004162_200 Hb_005440_040 Hb_005440_040 Hb_006977_010--Hb_005440_040 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_002311_030 Hb_002311_030 Hb_004162_200--Hb_002311_030 Hb_004162_200--Hb_007113_060 Hb_009151_010 Hb_009151_010 Hb_004162_200--Hb_009151_010 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040 Hb_000336_120 Hb_000336_120 Hb_015175_070--Hb_000336_120 Hb_015175_070--Hb_000310_050 Hb_015175_070--Hb_002309_020 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_002309_020--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002309_020--Hb_001975_110 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_004899_230--Hb_000005_290 Hb_002276_080 Hb_002276_080 Hb_004899_230--Hb_002276_080 Hb_029883_010 Hb_029883_010 Hb_004899_230--Hb_029883_010 Hb_004899_230--Hb_002092_060 Hb_004899_230--Hb_006977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224159 4.22118 16.2924 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.57572

CAGE analysis