Hb_005298_010

Information

Type -
Description -
Location Contig5298: 3698-5274
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005298_010 0.0 - - -
2 Hb_112399_010 0.1377182636 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_005625_060 0.1515986156 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
4 Hb_096225_020 0.1559554341 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
5 Hb_001184_110 0.1638656498 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
6 Hb_000436_010 0.1730713066 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
7 Hb_169246_010 0.1771909965 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002849_210 0.1785635056 - - protein binding protein, putative [Ricinus communis]
9 Hb_007101_130 0.1811268029 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005396_080 0.1821275741 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
11 Hb_000123_110 0.1824759126 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
12 Hb_002609_280 0.1850573339 - - villin 1-4, putative [Ricinus communis]
13 Hb_001514_190 0.1877908396 - - -
14 Hb_000179_050 0.1892526257 - - 40S ribosomal protein S17A [Hevea brasiliensis]
15 Hb_000340_430 0.190557148 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000363_010 0.1912674541 - - -
17 Hb_000196_090 0.1913461656 - - axonemal dynein light chain, putative [Ricinus communis]
18 Hb_000022_230 0.1918619234 - - hypothetical protein RCOM_0803470 [Ricinus communis]
19 Hb_001587_020 0.1924023491 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
20 Hb_005333_130 0.1931537799 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005298_010 Hb_005298_010 Hb_112399_010 Hb_112399_010 Hb_005298_010--Hb_112399_010 Hb_005625_060 Hb_005625_060 Hb_005298_010--Hb_005625_060 Hb_096225_020 Hb_096225_020 Hb_005298_010--Hb_096225_020 Hb_001184_110 Hb_001184_110 Hb_005298_010--Hb_001184_110 Hb_000436_010 Hb_000436_010 Hb_005298_010--Hb_000436_010 Hb_169246_010 Hb_169246_010 Hb_005298_010--Hb_169246_010 Hb_055384_010 Hb_055384_010 Hb_112399_010--Hb_055384_010 Hb_000056_100 Hb_000056_100 Hb_112399_010--Hb_000056_100 Hb_112399_010--Hb_001184_110 Hb_000853_110 Hb_000853_110 Hb_112399_010--Hb_000853_110 Hb_112399_010--Hb_005625_060 Hb_005625_060--Hb_000853_110 Hb_005625_060--Hb_001184_110 Hb_007101_130 Hb_007101_130 Hb_005625_060--Hb_007101_130 Hb_015001_020 Hb_015001_020 Hb_005625_060--Hb_015001_020 Hb_000123_260 Hb_000123_260 Hb_005625_060--Hb_000123_260 Hb_027472_180 Hb_027472_180 Hb_005625_060--Hb_027472_180 Hb_002983_030 Hb_002983_030 Hb_096225_020--Hb_002983_030 Hb_005396_080 Hb_005396_080 Hb_096225_020--Hb_005396_080 Hb_000340_430 Hb_000340_430 Hb_096225_020--Hb_000340_430 Hb_004453_140 Hb_004453_140 Hb_096225_020--Hb_004453_140 Hb_005867_040 Hb_005867_040 Hb_096225_020--Hb_005867_040 Hb_001184_110--Hb_007101_130 Hb_006846_110 Hb_006846_110 Hb_001184_110--Hb_006846_110 Hb_008453_090 Hb_008453_090 Hb_001184_110--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_001184_110--Hb_000671_150 Hb_000935_050 Hb_000935_050 Hb_001184_110--Hb_000935_050 Hb_007672_010 Hb_007672_010 Hb_001184_110--Hb_007672_010 Hb_006816_450 Hb_006816_450 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_000723_160 Hb_000723_160 Hb_000436_010--Hb_000723_160 Hb_007161_010 Hb_007161_010 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_001100_010 Hb_001100_010 Hb_000436_010--Hb_001100_010 Hb_007617_020 Hb_007617_020 Hb_169246_010--Hb_007617_020 Hb_002374_490 Hb_002374_490 Hb_169246_010--Hb_002374_490 Hb_001623_330 Hb_001623_330 Hb_169246_010--Hb_001623_330 Hb_000866_300 Hb_000866_300 Hb_169246_010--Hb_000866_300 Hb_011805_080 Hb_011805_080 Hb_169246_010--Hb_011805_080 Hb_005031_070 Hb_005031_070 Hb_169246_010--Hb_005031_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.284737 0.18399 0.039848 0 0.335037 0.254171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22794 0.626888 0.463977 0.258429 0

CAGE analysis