Hb_005298_020

Information

Type -
Description -
Location Contig5298: 6285-14627
Sequence    

Annotation

kegg
ID rcu:RCOM_0837560
description E3 ubiquitin ligase apc2, putative
nr
ID XP_012067685.1
description PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
swissprot
ID Q8H1U5
description Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1
trembl
ID A0A067L9T4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15637 PE=3 SV=1
Gene Ontology
ID GO:0005819
description anaphase-promoting complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47280: 6243-9655 , PASA_asmbl_47281: 10099-12054 , PASA_asmbl_47282: 12120-14124 , PASA_asmbl_47283: 14392-14598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005298_020 0.0 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
2 Hb_002374_210 0.0770553018 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
3 Hb_158845_060 0.0830912787 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
4 Hb_024758_020 0.0865151923 - - acyl-CoA binding protein 3B [Vernicia fordii]
5 Hb_080147_050 0.091698501 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
6 Hb_002007_260 0.0967436144 - - beta-mannosidase, putative [Ricinus communis]
7 Hb_007894_160 0.0991082974 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
8 Hb_000317_110 0.09960189 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_160608_010 0.1000796014 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
10 Hb_000599_360 0.1018390234 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_000297_030 0.1024100611 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
12 Hb_000205_280 0.1028599459 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
13 Hb_002025_270 0.1036056851 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
14 Hb_019840_030 0.1072487679 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
15 Hb_001646_010 0.1077835595 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
16 Hb_006478_030 0.1090932896 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
17 Hb_000046_600 0.1091931561 - - PREDICTED: cullin-1-like [Jatropha curcas]
18 Hb_009476_120 0.109232872 - - Clathrin heavy chain 1 [Glycine soja]
19 Hb_044486_040 0.1111510628 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
20 Hb_143629_020 0.1113715703 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]

Gene co-expression network

sample Hb_005298_020 Hb_005298_020 Hb_002374_210 Hb_002374_210 Hb_005298_020--Hb_002374_210 Hb_158845_060 Hb_158845_060 Hb_005298_020--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_005298_020--Hb_024758_020 Hb_080147_050 Hb_080147_050 Hb_005298_020--Hb_080147_050 Hb_002007_260 Hb_002007_260 Hb_005298_020--Hb_002007_260 Hb_007894_160 Hb_007894_160 Hb_005298_020--Hb_007894_160 Hb_044486_040 Hb_044486_040 Hb_002374_210--Hb_044486_040 Hb_001646_010 Hb_001646_010 Hb_002374_210--Hb_001646_010 Hb_000243_130 Hb_000243_130 Hb_002374_210--Hb_000243_130 Hb_002374_210--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_002374_210--Hb_004064_050 Hb_003964_110 Hb_003964_110 Hb_158845_060--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_158845_060--Hb_000599_360 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_024758_020--Hb_158845_060 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_024758_020--Hb_003964_110 Hb_020805_180 Hb_020805_180 Hb_080147_050--Hb_020805_180 Hb_000321_090 Hb_000321_090 Hb_080147_050--Hb_000321_090 Hb_000834_230 Hb_000834_230 Hb_080147_050--Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_080147_050--Hb_000787_200 Hb_007245_020 Hb_007245_020 Hb_080147_050--Hb_007245_020 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_010042_030 Hb_010042_030 Hb_002007_260--Hb_010042_030 Hb_001085_290 Hb_001085_290 Hb_002007_260--Hb_001085_290 Hb_001159_030 Hb_001159_030 Hb_002007_260--Hb_001159_030 Hb_001558_040 Hb_001558_040 Hb_002007_260--Hb_001558_040 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010 Hb_000610_040 Hb_000610_040 Hb_007894_160--Hb_000610_040 Hb_008397_010 Hb_008397_010 Hb_007894_160--Hb_008397_010 Hb_002686_040 Hb_002686_040 Hb_007894_160--Hb_002686_040 Hb_007894_160--Hb_000243_130 Hb_103747_020 Hb_103747_020 Hb_007894_160--Hb_103747_020 Hb_002475_040 Hb_002475_040 Hb_007894_160--Hb_002475_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66044 4.96319 6.16055 5.27346 3.70028 3.13687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12419 0.668889 2.0449 6.64759 5.02277

CAGE analysis