Hb_005305_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig5305: 10355-11674
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05860g
description POPTRDRAFT_203071; hypothetical protein
nr
ID XP_012089996.1
description PREDICTED: transcription factor MYB46 [Jatropha curcas]
swissprot
ID Q9LXV2
description Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1
trembl
ID A0A067JRD5
description MYB family protein OS=Jatropha curcas GN=JCGZ_25920 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47324: 10699-10822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_010 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
2 Hb_000834_060 0.1494226949 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_033363_050 0.1581781306 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
4 Hb_074109_010 0.1608611229 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
5 Hb_003688_140 0.1646955628 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
6 Hb_004357_060 0.1701245807 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
7 Hb_000002_300 0.1798526688 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
8 Hb_000479_210 0.1812813473 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
9 Hb_000005_100 0.1823633158 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
10 Hb_002890_300 0.1829666272 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_005784_030 0.1831571603 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
12 Hb_000099_050 0.185000074 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005488_130 0.1898183573 - - transporter, putative [Ricinus communis]
14 Hb_010098_040 0.1909734806 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
15 Hb_121089_010 0.1918382982 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
16 Hb_000368_120 0.1923817574 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
17 Hb_002636_030 0.1934446159 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
18 Hb_000946_060 0.193997899 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X2 [Jatropha curcas]
19 Hb_000684_200 0.1942745426 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_002716_110 0.1957530587 - - PREDICTED: interaptin [Jatropha curcas]

Gene co-expression network

sample Hb_005305_010 Hb_005305_010 Hb_000834_060 Hb_000834_060 Hb_005305_010--Hb_000834_060 Hb_033363_050 Hb_033363_050 Hb_005305_010--Hb_033363_050 Hb_074109_010 Hb_074109_010 Hb_005305_010--Hb_074109_010 Hb_003688_140 Hb_003688_140 Hb_005305_010--Hb_003688_140 Hb_004357_060 Hb_004357_060 Hb_005305_010--Hb_004357_060 Hb_000002_300 Hb_000002_300 Hb_005305_010--Hb_000002_300 Hb_142663_020 Hb_142663_020 Hb_000834_060--Hb_142663_020 Hb_000479_210 Hb_000479_210 Hb_000834_060--Hb_000479_210 Hb_000684_200 Hb_000684_200 Hb_000834_060--Hb_000684_200 Hb_005181_120 Hb_005181_120 Hb_000834_060--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000834_060--Hb_010098_040 Hb_010557_010 Hb_010557_010 Hb_000834_060--Hb_010557_010 Hb_000115_360 Hb_000115_360 Hb_033363_050--Hb_000115_360 Hb_000665_200 Hb_000665_200 Hb_033363_050--Hb_000665_200 Hb_005695_080 Hb_005695_080 Hb_033363_050--Hb_005695_080 Hb_001865_010 Hb_001865_010 Hb_033363_050--Hb_001865_010 Hb_004223_270 Hb_004223_270 Hb_033363_050--Hb_004223_270 Hb_000005_100 Hb_000005_100 Hb_033363_050--Hb_000005_100 Hb_074109_010--Hb_000005_100 Hb_074109_010--Hb_003688_140 Hb_003055_070 Hb_003055_070 Hb_074109_010--Hb_003055_070 Hb_004648_030 Hb_004648_030 Hb_074109_010--Hb_004648_030 Hb_074109_010--Hb_000834_060 Hb_074109_010--Hb_004223_270 Hb_000538_300 Hb_000538_300 Hb_003688_140--Hb_000538_300 Hb_000264_280 Hb_000264_280 Hb_003688_140--Hb_000264_280 Hb_003688_140--Hb_000684_200 Hb_003688_140--Hb_000005_100 Hb_004162_270 Hb_004162_270 Hb_003688_140--Hb_004162_270 Hb_003688_140--Hb_010098_040 Hb_004357_060--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_004357_060--Hb_005784_030 Hb_006420_010 Hb_006420_010 Hb_004357_060--Hb_006420_010 Hb_000054_030 Hb_000054_030 Hb_004357_060--Hb_000054_030 Hb_005917_020 Hb_005917_020 Hb_004357_060--Hb_005917_020 Hb_007904_060 Hb_007904_060 Hb_004357_060--Hb_007904_060 Hb_003141_060 Hb_003141_060 Hb_000002_300--Hb_003141_060 Hb_001541_280 Hb_001541_280 Hb_000002_300--Hb_001541_280 Hb_074548_010 Hb_074548_010 Hb_000002_300--Hb_074548_010 Hb_003605_060 Hb_003605_060 Hb_000002_300--Hb_003605_060 Hb_000948_120 Hb_000948_120 Hb_000002_300--Hb_000948_120 Hb_002636_030 Hb_002636_030 Hb_000002_300--Hb_002636_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0188997 0.833922 1.54537 0.667576 0.0531275 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0431978 0.475703 0.189105 0.25888 2.45381

CAGE analysis