Hb_005305_030

Information

Type -
Description -
Location Contig5305: 19788-23500
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05830g
description POPTRDRAFT_722929; MATE efflux family protein
nr
ID KDP22091.1
description hypothetical protein JCGZ_25922 [Jatropha curcas]
swissprot
ID Q9SYD6
description MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2
trembl
ID A0A067JDZ9
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_25922 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_030 0.0 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
2 Hb_092029_010 0.1201998275 - - Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_000959_010 0.1229384251 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
4 Hb_000465_450 0.1326006161 - - triacylglycerol lipase, putative [Ricinus communis]
5 Hb_000767_010 0.1383996106 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
6 Hb_000522_010 0.149500587 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
7 Hb_007237_010 0.1510290536 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000237_160 0.1528470567 - - BEL1-like homeodomain protein 1 [Morus notabilis]
9 Hb_000215_290 0.1534459939 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
10 Hb_005488_030 0.1573021965 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
11 Hb_002308_060 0.160986213 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
12 Hb_003517_090 0.1615463161 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
13 Hb_001706_020 0.1616956831 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
14 Hb_000847_010 0.1618589094 - - PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
15 Hb_001951_230 0.1638595868 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
16 Hb_026144_030 0.1654497688 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
17 Hb_000386_050 0.1655784909 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
18 Hb_060198_010 0.169313853 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_143629_200 0.1699546699 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
20 Hb_001514_150 0.171460537 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_005305_030 Hb_005305_030 Hb_092029_010 Hb_092029_010 Hb_005305_030--Hb_092029_010 Hb_000959_010 Hb_000959_010 Hb_005305_030--Hb_000959_010 Hb_000465_450 Hb_000465_450 Hb_005305_030--Hb_000465_450 Hb_000767_010 Hb_000767_010 Hb_005305_030--Hb_000767_010 Hb_000522_010 Hb_000522_010 Hb_005305_030--Hb_000522_010 Hb_007237_010 Hb_007237_010 Hb_005305_030--Hb_007237_010 Hb_002308_060 Hb_002308_060 Hb_092029_010--Hb_002308_060 Hb_000264_340 Hb_000264_340 Hb_092029_010--Hb_000264_340 Hb_038833_010 Hb_038833_010 Hb_092029_010--Hb_038833_010 Hb_092029_010--Hb_000465_450 Hb_005306_020 Hb_005306_020 Hb_092029_010--Hb_005306_020 Hb_143629_200 Hb_143629_200 Hb_000959_010--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_000959_010--Hb_001486_100 Hb_006040_170 Hb_006040_170 Hb_000959_010--Hb_006040_170 Hb_000959_010--Hb_007237_010 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160 Hb_060198_010 Hb_060198_010 Hb_000465_450--Hb_060198_010 Hb_000465_450--Hb_002308_060 Hb_000465_450--Hb_007237_010 Hb_000465_450--Hb_000959_010 Hb_004007_200 Hb_004007_200 Hb_000465_450--Hb_004007_200 Hb_003077_140 Hb_003077_140 Hb_000767_010--Hb_003077_140 Hb_026144_030 Hb_026144_030 Hb_000767_010--Hb_026144_030 Hb_001357_360 Hb_001357_360 Hb_000767_010--Hb_001357_360 Hb_028872_100 Hb_028872_100 Hb_000767_010--Hb_028872_100 Hb_008111_010 Hb_008111_010 Hb_000767_010--Hb_008111_010 Hb_004007_230 Hb_004007_230 Hb_000767_010--Hb_004007_230 Hb_008494_090 Hb_008494_090 Hb_000522_010--Hb_008494_090 Hb_000365_220 Hb_000365_220 Hb_000522_010--Hb_000365_220 Hb_003517_100 Hb_003517_100 Hb_000522_010--Hb_003517_100 Hb_000417_410 Hb_000417_410 Hb_000522_010--Hb_000417_410 Hb_002888_040 Hb_002888_040 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_007237_010--Hb_060198_010 Hb_007237_010--Hb_006040_170 Hb_000120_870 Hb_000120_870 Hb_007237_010--Hb_000120_870 Hb_007951_070 Hb_007951_070 Hb_007237_010--Hb_007951_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.502863 0.190134 0.408734 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0278898 0.0219427 0.0413733 0.31491 0.783437

CAGE analysis