Hb_005305_040

Information

Type transcription factor
Description TF Family: C3H
Location Contig5305: 25675-27684
Sequence    

Annotation

kegg
ID rcu:RCOM_1578200
description transcription factor, putative
nr
ID XP_002513504.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9LXV4
description Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1
trembl
ID B9RID5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1578200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47329: 27373-27572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_040 0.0 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
2 Hb_000161_140 0.0923889347 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
3 Hb_001936_120 0.0941378008 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
4 Hb_000928_200 0.1006341483 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
5 Hb_002759_030 0.1028742651 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
6 Hb_000457_120 0.1107661517 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
7 Hb_163950_050 0.1120934798 - - protein binding protein, putative [Ricinus communis]
8 Hb_029791_010 0.1163073961 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
9 Hb_000000_260 0.1167146229 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
10 Hb_015934_090 0.1196552797 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
11 Hb_000003_580 0.1234880164 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001405_170 0.1281108401 - - aspartyl protease family protein [Populus trichocarpa]
13 Hb_003086_030 0.1299821931 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
14 Hb_000358_060 0.1321324783 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
15 Hb_001541_210 0.133732861 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
16 Hb_147006_010 0.1346375475 - - receptor like protein 35 [Arabidopsis thaliana]
17 Hb_000317_170 0.1348032614 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
18 Hb_014361_010 0.1348763134 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
19 Hb_000230_410 0.1353276033 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
20 Hb_036520_030 0.1365601306 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]

Gene co-expression network

sample Hb_005305_040 Hb_005305_040 Hb_000161_140 Hb_000161_140 Hb_005305_040--Hb_000161_140 Hb_001936_120 Hb_001936_120 Hb_005305_040--Hb_001936_120 Hb_000928_200 Hb_000928_200 Hb_005305_040--Hb_000928_200 Hb_002759_030 Hb_002759_030 Hb_005305_040--Hb_002759_030 Hb_000457_120 Hb_000457_120 Hb_005305_040--Hb_000457_120 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_009070_020 Hb_009070_020 Hb_000161_140--Hb_009070_020 Hb_000161_140--Hb_001936_120 Hb_005741_030 Hb_005741_030 Hb_000161_140--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_000161_140--Hb_000193_180 Hb_039946_060 Hb_039946_060 Hb_000161_140--Hb_039946_060 Hb_029791_010 Hb_029791_010 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070 Hb_000928_200--Hb_000457_120 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_000856_030 Hb_000856_030 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_014361_010 Hb_014361_010 Hb_002759_030--Hb_014361_010 Hb_002759_030--Hb_000457_120 Hb_002759_030--Hb_000928_200 Hb_001001_070 Hb_001001_070 Hb_002759_030--Hb_001001_070 Hb_000457_120--Hb_001936_120 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_002613_040 Hb_002613_040 Hb_163950_050--Hb_002613_040 Hb_015934_090 Hb_015934_090 Hb_163950_050--Hb_015934_090 Hb_000103_130 Hb_000103_130 Hb_163950_050--Hb_000103_130 Hb_002986_030 Hb_002986_030 Hb_163950_050--Hb_002986_030 Hb_004032_190 Hb_004032_190 Hb_163950_050--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_163950_050--Hb_001206_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00987583 0.584088 0.639491 2.65275 0.00988962 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224439 0.0706381 0.0334925 0.0843048 1.38108

CAGE analysis