Hb_005305_050

Information

Type -
Description -
Location Contig5305: 28959-34513
Sequence    

Annotation

kegg
ID rcu:RCOM_1578190
description hypothetical protein
nr
ID XP_012090005.1
description PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
swissprot
ID Q2KI54
description Armadillo repeat-containing protein 8 OS=Bos taurus GN=ARMC8 PE=2 SV=1
trembl
ID A0A067JRE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25925 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47330: 27967-28286 , PASA_asmbl_47331: 29354-34311 , PASA_asmbl_47332: 32516-32906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_050 0.0 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
2 Hb_000363_040 0.0730396983 - - Protein transport protein Sec24A, putative [Ricinus communis]
3 Hb_000109_180 0.078921165 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
4 Hb_016347_010 0.0808377918 - - protein transporter, putative [Ricinus communis]
5 Hb_000984_170 0.0841075057 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_003544_050 0.0862132027 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
7 Hb_002908_050 0.0879217714 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
8 Hb_004677_050 0.088020186 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
9 Hb_004480_100 0.0926608211 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
10 Hb_000140_210 0.0928640391 - - sec10, putative [Ricinus communis]
11 Hb_103684_010 0.0940400384 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
12 Hb_023344_160 0.0948949774 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
13 Hb_000535_050 0.0983071864 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
14 Hb_004030_080 0.0984387288 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
15 Hb_007044_050 0.0994510616 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
16 Hb_001789_150 0.0997565395 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
17 Hb_011883_020 0.100339404 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_004208_050 0.102699783 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
19 Hb_066920_030 0.1037258549 - - PREDICTED: adagio protein 1 [Jatropha curcas]
20 Hb_006452_120 0.1040171262 - - PREDICTED: protein FAM188A [Jatropha curcas]

Gene co-expression network

sample Hb_005305_050 Hb_005305_050 Hb_000363_040 Hb_000363_040 Hb_005305_050--Hb_000363_040 Hb_000109_180 Hb_000109_180 Hb_005305_050--Hb_000109_180 Hb_016347_010 Hb_016347_010 Hb_005305_050--Hb_016347_010 Hb_000984_170 Hb_000984_170 Hb_005305_050--Hb_000984_170 Hb_003544_050 Hb_003544_050 Hb_005305_050--Hb_003544_050 Hb_002908_050 Hb_002908_050 Hb_005305_050--Hb_002908_050 Hb_000363_040--Hb_016347_010 Hb_000363_040--Hb_002908_050 Hb_004677_050 Hb_004677_050 Hb_000363_040--Hb_004677_050 Hb_000363_040--Hb_000109_180 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100 Hb_008748_030 Hb_008748_030 Hb_000109_180--Hb_008748_030 Hb_006059_010 Hb_006059_010 Hb_000109_180--Hb_006059_010 Hb_000012_310 Hb_000012_310 Hb_000109_180--Hb_000012_310 Hb_000227_160 Hb_000227_160 Hb_000109_180--Hb_000227_160 Hb_000327_250 Hb_000327_250 Hb_016347_010--Hb_000327_250 Hb_016347_010--Hb_004677_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_021576_010 Hb_021576_010 Hb_016347_010--Hb_021576_010 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_000984_170--Hb_002908_050 Hb_000140_210 Hb_000140_210 Hb_003544_050--Hb_000140_210 Hb_000809_230 Hb_000809_230 Hb_003544_050--Hb_000809_230 Hb_001377_350 Hb_001377_350 Hb_003544_050--Hb_001377_350 Hb_009296_040 Hb_009296_040 Hb_003544_050--Hb_009296_040 Hb_002749_060 Hb_002749_060 Hb_003544_050--Hb_002749_060 Hb_004679_030 Hb_004679_030 Hb_003544_050--Hb_004679_030 Hb_001876_010 Hb_001876_010 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_002908_050--Hb_000011_060 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12672 4.03937 2.06491 4.52956 1.51751 2.80199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3292 2.19382 4.34118 5.92173 4.33869

CAGE analysis