Hb_005305_060

Information

Type -
Description -
Location Contig5305: 35647-37701
Sequence    

Annotation

kegg
ID vvi:100241180
description 50S ribosomal protein HLP, mitochondrial
nr
ID EYU33392.1
description hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
swissprot
ID Q93Z17
description 50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana GN=HLP PE=2 SV=1
trembl
ID A0A022QXM7
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015111mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47333: 35755-38152 , PASA_asmbl_47334: 35787-37508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_060 0.0 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
2 Hb_144898_010 0.1357825728 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_000329_770 0.1426161634 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027445_060 0.1426439745 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
5 Hb_001722_020 0.1462773673 - - -
6 Hb_115919_010 0.1549066243 - - unknown [Lotus japonicus]
7 Hb_005965_010 0.1558083859 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
8 Hb_004117_180 0.1584492567 - - -
9 Hb_028639_050 0.1607006522 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
10 Hb_000107_140 0.1623065878 - - -
11 Hb_121236_010 0.1644274648 - - geranyl-diphosphate synthase [Hevea brasiliensis]
12 Hb_004502_050 0.1667156675 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
13 Hb_012807_080 0.1696135144 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
14 Hb_073367_010 0.1715923786 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
15 Hb_011016_090 0.1728565138 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
16 Hb_120221_010 0.1743663685 - - -
17 Hb_106005_010 0.1747152599 - - EG5651 [Manihot esculenta]
18 Hb_000122_030 0.174851032 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
19 Hb_005054_070 0.174960386 - - unnamed protein product [Vitis vinifera]
20 Hb_000001_040 0.1764837268 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_005305_060 Hb_005305_060 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_181320_010 Hb_181320_010 Hb_144898_010--Hb_181320_010 Hb_144898_010--Hb_001722_020 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_015057_010 Hb_015057_010 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_006502_080 Hb_006502_080 Hb_000329_770--Hb_006502_080 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000380_010 Hb_000380_010 Hb_000329_770--Hb_000380_010 Hb_028639_050 Hb_028639_050 Hb_000329_770--Hb_028639_050 Hb_121236_010 Hb_121236_010 Hb_027445_060--Hb_121236_010 Hb_027445_060--Hb_115919_010 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_001095_060 Hb_001095_060 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_088774_010 Hb_088774_010 Hb_001722_020--Hb_088774_010 Hb_001722_020--Hb_005965_010 Hb_071923_010 Hb_071923_010 Hb_001722_020--Hb_071923_010 Hb_000295_100 Hb_000295_100 Hb_001722_020--Hb_000295_100 Hb_115919_010--Hb_121236_010 Hb_115919_010--Hb_001095_060 Hb_061581_010 Hb_061581_010 Hb_115919_010--Hb_061581_010 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030 Hb_006455_110 Hb_006455_110 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61861 1.57554 1.26955 2.32631 9.87411 41.8955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1385 12.6215 3.01339 2.3198 0.876271

CAGE analysis