Hb_005305_080

Information

Type -
Description -
Location Contig5305: 43014-46857
Sequence    

Annotation

kegg
ID rcu:RCOM_1578070
description heterogeneous nuclear ribonucleoprotein, putative
nr
ID XP_012090009.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
swissprot
ID Q60HC3
description Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3
trembl
ID A0A067JE05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25927 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein f-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47336: 42961-46854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_080 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
2 Hb_010504_020 0.0421390026 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_005618_170 0.0512973415 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
4 Hb_000510_130 0.0537993537 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
5 Hb_004254_120 0.0566816746 - - conserved hypothetical protein [Ricinus communis]
6 Hb_032202_190 0.0572614155 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
7 Hb_000876_070 0.0609754112 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_159809_020 0.0653891168 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_003092_040 0.0665664056 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
10 Hb_007691_030 0.0676584405 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
11 Hb_020956_020 0.0677629827 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
12 Hb_004223_280 0.0684535914 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
13 Hb_007441_200 0.06881868 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
14 Hb_005663_060 0.0689571858 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
15 Hb_001226_160 0.0701017284 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
16 Hb_005289_030 0.0709575122 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
17 Hb_002016_110 0.0711435387 - - transducin family protein [Populus trichocarpa]
18 Hb_000656_400 0.0713107699 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
19 Hb_003057_100 0.0719622361 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
20 Hb_000398_180 0.0734344602 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]

Gene co-expression network

sample Hb_005305_080 Hb_005305_080 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_000876_070 Hb_000876_070 Hb_005305_080--Hb_000876_070 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_005618_170--Hb_004254_120 Hb_005618_170--Hb_000876_070 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_000510_130--Hb_020956_020 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_004254_120--Hb_032202_190 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_032202_190--Hb_000876_070 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4906 23.7053 13.7617 22.9549 34.8879 43.2793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.1071 50.8916 43.7587 25.4145 19.3021

CAGE analysis