Hb_005305_090

Information

Type -
Description -
Location Contig5305: 48532-48921
Sequence    

Annotation

kegg
ID tcc:TCM_040708
description hypothetical protein
nr
ID XP_011006216.1
description PREDICTED: uncharacterized protein LOC105112272 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JE45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25928 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_090 0.0 - - PREDICTED: uncharacterized protein LOC105112272 [Populus euphratica]
2 Hb_001031_080 0.1387546875 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
3 Hb_001538_090 0.1391873515 - - 40S ribosomal protein S29 [Morus notabilis]
4 Hb_003536_110 0.1458115612 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_134949_020 0.1499297521 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
6 Hb_000948_190 0.1537088538 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
7 Hb_000363_320 0.1556790434 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
8 Hb_168054_010 0.1566927672 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
9 Hb_002864_050 0.1569213812 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
10 Hb_002207_110 0.1581756107 - - -
11 Hb_001341_090 0.1597146573 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
12 Hb_001842_040 0.1598542589 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
13 Hb_165132_010 0.160446372 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
14 Hb_001817_090 0.161037095 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
15 Hb_000302_220 0.1610407947 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
16 Hb_078185_010 0.1614256362 - - -
17 Hb_000473_020 0.1614628584 - - expressed protein, putative [Ricinus communis]
18 Hb_000699_160 0.1615746725 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
19 Hb_002783_270 0.1617972036 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
20 Hb_005278_020 0.1627076897 - - PREDICTED: sorcin-like [Jatropha curcas]

Gene co-expression network

sample Hb_005305_090 Hb_005305_090 Hb_001031_080 Hb_001031_080 Hb_005305_090--Hb_001031_080 Hb_001538_090 Hb_001538_090 Hb_005305_090--Hb_001538_090 Hb_003536_110 Hb_003536_110 Hb_005305_090--Hb_003536_110 Hb_134949_020 Hb_134949_020 Hb_005305_090--Hb_134949_020 Hb_000948_190 Hb_000948_190 Hb_005305_090--Hb_000948_190 Hb_000363_320 Hb_000363_320 Hb_005305_090--Hb_000363_320 Hb_001053_180 Hb_001053_180 Hb_001031_080--Hb_001053_180 Hb_116349_100 Hb_116349_100 Hb_001031_080--Hb_116349_100 Hb_000096_090 Hb_000096_090 Hb_001031_080--Hb_000096_090 Hb_007479_050 Hb_007479_050 Hb_001031_080--Hb_007479_050 Hb_001396_180 Hb_001396_180 Hb_001031_080--Hb_001396_180 Hb_001369_640 Hb_001369_640 Hb_001538_090--Hb_001369_640 Hb_001341_090 Hb_001341_090 Hb_001538_090--Hb_001341_090 Hb_001538_090--Hb_134949_020 Hb_001538_090--Hb_003536_110 Hb_002375_070 Hb_002375_070 Hb_001538_090--Hb_002375_070 Hb_007113_070 Hb_007113_070 Hb_001538_090--Hb_007113_070 Hb_000473_020 Hb_000473_020 Hb_003536_110--Hb_000473_020 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020 Hb_165132_010 Hb_165132_010 Hb_134949_020--Hb_165132_010 Hb_134949_020--Hb_001341_090 Hb_033594_110 Hb_033594_110 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_134949_020--Hb_002864_050 Hb_001314_100 Hb_001314_100 Hb_134949_020--Hb_001314_100 Hb_001247_350 Hb_001247_350 Hb_000948_190--Hb_001247_350 Hb_007432_080 Hb_007432_080 Hb_000948_190--Hb_007432_080 Hb_003919_010 Hb_003919_010 Hb_000948_190--Hb_003919_010 Hb_168054_010 Hb_168054_010 Hb_000948_190--Hb_168054_010 Hb_000975_250 Hb_000975_250 Hb_000948_190--Hb_000975_250 Hb_004502_020 Hb_004502_020 Hb_000948_190--Hb_004502_020 Hb_000699_160 Hb_000699_160 Hb_000363_320--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_000363_320--Hb_006452_040 Hb_001221_310 Hb_001221_310 Hb_000363_320--Hb_001221_310 Hb_005278_020 Hb_005278_020 Hb_000363_320--Hb_005278_020 Hb_003018_050 Hb_003018_050 Hb_000363_320--Hb_003018_050 Hb_026314_020 Hb_026314_020 Hb_000363_320--Hb_026314_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.538 2.13972 16.619 20.0006 11.801 20.7092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9775 34.5271 21.926 1.06221 3.43731

CAGE analysis