Hb_005305_110

Information

Type -
Description -
Location Contig5305: 61967-65516
Sequence    

Annotation

kegg
ID rcu:RCOM_1578040
description Translocation protein sec62, putative
nr
ID XP_012090016.1
description PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
swissprot
ID O13787
description Translocation protein sec62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec62 PE=3 SV=1
trembl
ID A0A067JRE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25930 PE=4 SV=1
Gene Ontology
ID GO:0005886
description translocation protein sec62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47342: 61999-65504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_110 0.0 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
2 Hb_002111_040 0.0698440136 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
3 Hb_031862_100 0.0752697818 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_006420_080 0.0766643276 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000291_080 0.0831426614 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
6 Hb_000477_060 0.0882625415 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
7 Hb_000363_360 0.0916756983 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
8 Hb_001390_130 0.0937013626 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
9 Hb_026198_070 0.0946188529 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
10 Hb_015934_070 0.0954905745 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
11 Hb_000050_200 0.0961383565 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
12 Hb_024128_020 0.0969432574 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
13 Hb_000072_320 0.0969844768 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
14 Hb_011344_190 0.0971494344 - - PREDICTED: maspardin [Jatropha curcas]
15 Hb_000441_200 0.0979056839 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
16 Hb_003633_050 0.0989047818 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_000028_350 0.0991227046 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
18 Hb_005054_210 0.0996044595 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
19 Hb_076233_040 0.0997867763 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
20 Hb_002014_020 0.099791295 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005305_110 Hb_005305_110 Hb_002111_040 Hb_002111_040 Hb_005305_110--Hb_002111_040 Hb_031862_100 Hb_031862_100 Hb_005305_110--Hb_031862_100 Hb_006420_080 Hb_006420_080 Hb_005305_110--Hb_006420_080 Hb_000291_080 Hb_000291_080 Hb_005305_110--Hb_000291_080 Hb_000477_060 Hb_000477_060 Hb_005305_110--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_005305_110--Hb_000363_360 Hb_002111_040--Hb_000291_080 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_002111_040--Hb_031862_100 Hb_001390_130 Hb_001390_130 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_006420_080--Hb_010883_050 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_006420_080--Hb_003697_040 Hb_000291_080--Hb_001390_130 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000291_080--Hb_000363_360 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000477_060--Hb_000363_360 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5004 4.82278 8.07828 19.2531 12.536 9.13711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6374 17.6485 19.8253 17.2321 12.9582

CAGE analysis