Hb_005305_140

Information

Type -
Description -
Location Contig5305: 79222-79545
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05720g
description POPTRDRAFT_650065; photosystem II 5 kD family protein
nr
ID ABK95667.1
description unknown [Populus trichocarpa]
swissprot
ID B3EWI4
description Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1
trembl
ID A9PH14
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_B10.ab1: 79127-79601 , 003_H05.ab1: 79127-79599 , 008_C01.ab1: 79065-79622 , 008_P20.ab1: 79126-79601 , 012_I04.ab1: 79127-79599 , 024_P03.ab1: 79065-79622 , 031_O03.ab1: 79122-79609 , 033_F12.ab1: 79126-79601 , 035_C21.ab1: 79121-79599 , 036_I18.ab1: 79127-79622 , 037_P16.ab1: 79126-79601 , 041_H09.ab1: 79117-79601 , 043_L24.ab1: 79121-79599 , 043_P01.ab1: 79126-79449 , 044_E12.ab1: 79128-79601 , 048_F24.ab1: 79065-79622

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_140 0.0 - - unknown [Populus trichocarpa]
2 Hb_004109_140 0.050858608 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000386_010 0.0565563554 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001864_050 0.0691321424 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
5 Hb_002025_220 0.0764237833 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_001662_090 0.0810903004 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000834_170 0.0816002284 - - polygalacturonase, putative [Ricinus communis]
8 Hb_005227_030 0.0929236976 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
9 Hb_000482_160 0.0942853548 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
10 Hb_002805_200 0.0990941296 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
11 Hb_000483_470 0.099223954 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_011930_060 0.1006477579 - - nitrate transporter, putative [Ricinus communis]
13 Hb_005888_060 0.1030027111 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
14 Hb_000445_270 0.1050489341 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000928_100 0.1054306618 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_000809_190 0.1062209688 - - PREDICTED: myosin-6-like [Jatropha curcas]
17 Hb_078954_030 0.1063083868 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001916_110 0.1065969793 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
19 Hb_006775_100 0.1090392675 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_000025_700 0.1148608541 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]

Gene co-expression network

sample Hb_005305_140 Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_005305_140--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005305_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_005305_140--Hb_001864_050 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_005227_030 Hb_005227_030 Hb_004109_140--Hb_005227_030 Hb_004109_140--Hb_000386_010 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_000928_100 Hb_000928_100 Hb_000386_010--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_005888_060 Hb_005888_060 Hb_000386_010--Hb_005888_060 Hb_000386_010--Hb_001662_090 Hb_002805_200 Hb_002805_200 Hb_001864_050--Hb_002805_200 Hb_001338_120 Hb_001338_120 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_000281_120 Hb_000281_120 Hb_001864_050--Hb_000281_120 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_002025_220--Hb_000834_170 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270 Hb_001662_090--Hb_002805_200 Hb_001662_090--Hb_001864_050 Hb_006775_100 Hb_006775_100 Hb_001662_090--Hb_006775_100 Hb_001916_110 Hb_001916_110 Hb_001662_090--Hb_001916_110 Hb_000834_170--Hb_011930_060 Hb_000834_170--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_000834_170--Hb_002010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.520946 678.599 4153.39 430.146 0.749843 0.799805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4855 1.46625 0 17.0412 3300.34

CAGE analysis