Hb_005305_160

Information

Type -
Description -
Location Contig5305: 85483-88427
Sequence    

Annotation

kegg
ID rcu:RCOM_1577780
description hypothetical protein
nr
ID XP_002513492.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577780 PE=4 SV=1
Gene Ontology
ID GO:0005840
description myosin-8-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47348: 85128-85570 , PASA_asmbl_47349: 86858-87677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002757_010 0.1085801026 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
3 Hb_000077_300 0.1100731703 - - PREDICTED: expansin-B3-like [Jatropha curcas]
4 Hb_005116_120 0.1117912317 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
5 Hb_011671_050 0.1142445196 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
6 Hb_000297_210 0.1151341049 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
7 Hb_001439_050 0.1151803712 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
8 Hb_001053_170 0.1163808496 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
9 Hb_062807_010 0.1164327118 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
10 Hb_001999_160 0.1170397574 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
11 Hb_007520_050 0.1173351281 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
12 Hb_001348_040 0.1191125856 - - hypothetical protein VITISV_006651 [Vitis vinifera]
13 Hb_002301_120 0.1256989448 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
14 Hb_003777_260 0.1310183626 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
15 Hb_000261_550 0.1340353704 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
16 Hb_002081_060 0.1343947163 - - cyclin d, putative [Ricinus communis]
17 Hb_002700_030 0.1358842829 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
18 Hb_005276_190 0.1370751995 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
19 Hb_003894_170 0.137356771 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
20 Hb_000739_170 0.1378892548 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005305_160 Hb_005305_160 Hb_002757_010 Hb_002757_010 Hb_005305_160--Hb_002757_010 Hb_000077_300 Hb_000077_300 Hb_005305_160--Hb_000077_300 Hb_005116_120 Hb_005116_120 Hb_005305_160--Hb_005116_120 Hb_011671_050 Hb_011671_050 Hb_005305_160--Hb_011671_050 Hb_000297_210 Hb_000297_210 Hb_005305_160--Hb_000297_210 Hb_001439_050 Hb_001439_050 Hb_005305_160--Hb_001439_050 Hb_002757_010--Hb_000077_300 Hb_002700_030 Hb_002700_030 Hb_002757_010--Hb_002700_030 Hb_003902_070 Hb_003902_070 Hb_002757_010--Hb_003902_070 Hb_000205_180 Hb_000205_180 Hb_002757_010--Hb_000205_180 Hb_062807_010 Hb_062807_010 Hb_002757_010--Hb_062807_010 Hb_002757_010--Hb_005116_120 Hb_000077_300--Hb_002700_030 Hb_000077_300--Hb_003902_070 Hb_001310_060 Hb_001310_060 Hb_000077_300--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_000077_300--Hb_080147_070 Hb_000077_300--Hb_000205_180 Hb_003777_260 Hb_003777_260 Hb_005116_120--Hb_003777_260 Hb_181744_010 Hb_181744_010 Hb_005116_120--Hb_181744_010 Hb_000340_550 Hb_000340_550 Hb_005116_120--Hb_000340_550 Hb_005288_090 Hb_005288_090 Hb_005116_120--Hb_005288_090 Hb_001998_180 Hb_001998_180 Hb_005116_120--Hb_001998_180 Hb_001279_110 Hb_001279_110 Hb_005116_120--Hb_001279_110 Hb_000120_340 Hb_000120_340 Hb_011671_050--Hb_000120_340 Hb_002518_040 Hb_002518_040 Hb_011671_050--Hb_002518_040 Hb_011671_050--Hb_001439_050 Hb_001511_210 Hb_001511_210 Hb_011671_050--Hb_001511_210 Hb_003666_070 Hb_003666_070 Hb_011671_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_011671_050--Hb_007632_160 Hb_004122_010 Hb_004122_010 Hb_000297_210--Hb_004122_010 Hb_005181_170 Hb_005181_170 Hb_000297_210--Hb_005181_170 Hb_000297_210--Hb_007632_160 Hb_001348_100 Hb_001348_100 Hb_000297_210--Hb_001348_100 Hb_005675_050 Hb_005675_050 Hb_000297_210--Hb_005675_050 Hb_005276_190 Hb_005276_190 Hb_000297_210--Hb_005276_190 Hb_003101_020 Hb_003101_020 Hb_001439_050--Hb_003101_020 Hb_001439_050--Hb_062807_010 Hb_108576_020 Hb_108576_020 Hb_001439_050--Hb_108576_020 Hb_001439_050--Hb_002518_040 Hb_007313_030 Hb_007313_030 Hb_001439_050--Hb_007313_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131672 0.0239958 1.55901 0.826041 0.0123307 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0235914 0 0.216483 0.444834

CAGE analysis