Hb_005306_010

Information

Type -
Description -
Location Contig5306: 12512-19228
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47351: 14870-14956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_010 0.0 - - -
2 Hb_001638_230 0.18222181 - - RNA-binding region-containing protein, putative [Ricinus communis]
3 Hb_075247_010 0.2143922303 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
4 Hb_002998_070 0.225120336 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
5 Hb_010050_050 0.228726525 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
6 Hb_158092_010 0.2288617004 - - CYP51 [Hevea brasiliensis]
7 Hb_000211_030 0.2335365815 - - sugar transporter, putative [Ricinus communis]
8 Hb_008643_200 0.2340633518 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
9 Hb_021576_020 0.2366965479 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
10 Hb_036790_020 0.2383334965 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
11 Hb_062038_010 0.2396676547 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
12 Hb_000788_060 0.2407534649 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
13 Hb_002272_280 0.2408013533 - - phosphoglycerate mutase, putative [Ricinus communis]
14 Hb_009620_020 0.2416696946 - - conserved hypothetical protein [Ricinus communis]
15 Hb_189216_030 0.2433422794 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
16 Hb_004800_100 0.2452552889 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000465_270 0.2456062244 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000066_090 0.2459113562 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
19 Hb_002217_230 0.2461388754 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
20 Hb_000108_070 0.2464788084 - - alpha-tubulin 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005306_010 Hb_005306_010 Hb_001638_230 Hb_001638_230 Hb_005306_010--Hb_001638_230 Hb_075247_010 Hb_075247_010 Hb_005306_010--Hb_075247_010 Hb_002998_070 Hb_002998_070 Hb_005306_010--Hb_002998_070 Hb_010050_050 Hb_010050_050 Hb_005306_010--Hb_010050_050 Hb_158092_010 Hb_158092_010 Hb_005306_010--Hb_158092_010 Hb_000211_030 Hb_000211_030 Hb_005306_010--Hb_000211_030 Hb_002217_230 Hb_002217_230 Hb_001638_230--Hb_002217_230 Hb_001638_230--Hb_158092_010 Hb_004800_100 Hb_004800_100 Hb_001638_230--Hb_004800_100 Hb_002681_200 Hb_002681_200 Hb_001638_230--Hb_002681_200 Hb_000108_070 Hb_000108_070 Hb_001638_230--Hb_000108_070 Hb_189216_030 Hb_189216_030 Hb_001638_230--Hb_189216_030 Hb_075247_010--Hb_004800_100 Hb_000465_270 Hb_000465_270 Hb_075247_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_075247_010--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_000788_060 Hb_000788_060 Hb_075247_010--Hb_000788_060 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_000975_360 Hb_000975_360 Hb_010050_050--Hb_000975_360 Hb_000649_130 Hb_000649_130 Hb_010050_050--Hb_000649_130 Hb_021888_050 Hb_021888_050 Hb_010050_050--Hb_021888_050 Hb_001856_200 Hb_001856_200 Hb_010050_050--Hb_001856_200 Hb_008643_200 Hb_008643_200 Hb_010050_050--Hb_008643_200 Hb_003972_080 Hb_003972_080 Hb_010050_050--Hb_003972_080 Hb_003462_120 Hb_003462_120 Hb_158092_010--Hb_003462_120 Hb_001377_420 Hb_001377_420 Hb_158092_010--Hb_001377_420 Hb_001080_280 Hb_001080_280 Hb_158092_010--Hb_001080_280 Hb_000731_260 Hb_000731_260 Hb_158092_010--Hb_000731_260 Hb_148209_010 Hb_148209_010 Hb_158092_010--Hb_148209_010 Hb_000805_110 Hb_000805_110 Hb_000211_030--Hb_000805_110 Hb_000211_030--Hb_008643_200 Hb_000211_030--Hb_189216_030 Hb_002217_020 Hb_002217_020 Hb_000211_030--Hb_002217_020 Hb_003362_030 Hb_003362_030 Hb_000211_030--Hb_003362_030 Hb_000211_030--Hb_001856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.428478 0.375243 0.452586 1.23142 0.288665 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.673629 0.92594 1.521 0.614152 0

CAGE analysis