Hb_005306_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig5306: 22015-24122
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20370g
description hypothetical protein
nr
ID XP_012068953.1
description PREDICTED: transcription factor MYB86 [Jatropha curcas]
swissprot
ID Q9SPG3
description Transcription factor MYB26 OS=Arabidopsis thaliana GN=MYB26 PE=2 SV=1
trembl
ID A0A067KXA7
description MYB family protein OS=Jatropha curcas GN=JCGZ_24751 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb86

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47353: 22078-23763 , PASA_asmbl_47354: 23765-24006
cDNA
(Sanger)
(ID:Location)		 007_H03.ab1: 22528-23785

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_020 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
2 Hb_008111_010 0.1003489921 - - hypothetical protein VITISV_021527 [Vitis vinifera]
3 Hb_001971_020 0.1064238086 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
4 Hb_001357_360 0.1109670545 - - zinc finger protein, putative [Ricinus communis]
5 Hb_028872_100 0.1171848423 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
6 Hb_000264_340 0.1205010313 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
7 Hb_000767_010 0.1250271297 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
8 Hb_085010_010 0.1327026094 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
9 Hb_026144_030 0.1329053001 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
10 Hb_005470_040 0.1345515532 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
11 Hb_109489_010 0.1418374398 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
12 Hb_000597_080 0.1467626219 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
13 Hb_000417_150 0.1474835665 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
14 Hb_000866_390 0.1491440431 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
15 Hb_092029_010 0.1520544527 - - Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_123560_050 0.1522074757 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
17 Hb_000563_120 0.153680583 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
18 Hb_000614_190 0.1568529479 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
19 Hb_002609_130 0.1572826752 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
20 Hb_004007_230 0.1581704951 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_020 Hb_005306_020 Hb_008111_010 Hb_008111_010 Hb_005306_020--Hb_008111_010 Hb_001971_020 Hb_001971_020 Hb_005306_020--Hb_001971_020 Hb_001357_360 Hb_001357_360 Hb_005306_020--Hb_001357_360 Hb_028872_100 Hb_028872_100 Hb_005306_020--Hb_028872_100 Hb_000264_340 Hb_000264_340 Hb_005306_020--Hb_000264_340 Hb_000767_010 Hb_000767_010 Hb_005306_020--Hb_000767_010 Hb_026144_030 Hb_026144_030 Hb_008111_010--Hb_026144_030 Hb_005054_280 Hb_005054_280 Hb_008111_010--Hb_005054_280 Hb_085010_010 Hb_085010_010 Hb_008111_010--Hb_085010_010 Hb_008111_010--Hb_001971_020 Hb_001143_140 Hb_001143_140 Hb_008111_010--Hb_001143_140 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_001971_020--Hb_000264_340 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020 Hb_003077_140 Hb_003077_140 Hb_001357_360--Hb_003077_140 Hb_001357_360--Hb_000767_010 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_123560_050 Hb_123560_050 Hb_001357_360--Hb_123560_050 Hb_004007_230 Hb_004007_230 Hb_001357_360--Hb_004007_230 Hb_000685_140 Hb_000685_140 Hb_028872_100--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_028872_100--Hb_001411_100 Hb_028872_100--Hb_000767_010 Hb_000417_150 Hb_000417_150 Hb_028872_100--Hb_000417_150 Hb_000101_320 Hb_000101_320 Hb_028872_100--Hb_000101_320 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_000767_010--Hb_003077_140 Hb_000767_010--Hb_026144_030 Hb_000767_010--Hb_008111_010 Hb_000767_010--Hb_004007_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0642551 2.07748 0.267244 1.17121 0.0161014 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.3842 2.30328

CAGE analysis