Hb_005306_040

Information

Type -
Description -
Location Contig5306: 37784-40913
Sequence    

Annotation

kegg
ID rcu:RCOM_0655220
description calmodulin binding protein, putative
nr
ID XP_002521383.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5W4
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0655220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_040 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_000343_280 0.0954159302 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
3 Hb_000720_110 0.1120801719 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
4 Hb_001481_030 0.1274407398 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_055147_010 0.1375527676 - - thioredoxin H-type 7 [Hevea brasiliensis]
6 Hb_100873_040 0.1438601181 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
7 Hb_000692_180 0.1516396416 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
8 Hb_000408_010 0.151708474 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
9 Hb_000035_300 0.1545882115 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000223_050 0.1586536451 - - PREDICTED: endochitinase A-like [Jatropha curcas]
11 Hb_000059_290 0.1587229768 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
12 Hb_008111_020 0.158793789 - - Receptor like protein 6, putative [Theobroma cacao]
13 Hb_004785_120 0.1599319808 - - Receptor protein kinase 1 [Theobroma cacao]
14 Hb_003752_130 0.164249656 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
15 Hb_000512_080 0.1642670035 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_002481_070 0.1673773911 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
17 Hb_003751_050 0.1721213655 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
18 Hb_000203_030 0.172479646 - - -
19 Hb_001424_080 0.1766245842 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
20 Hb_015912_010 0.181186126 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_005306_040 Hb_005306_040 Hb_000343_280 Hb_000343_280 Hb_005306_040--Hb_000343_280 Hb_000720_110 Hb_000720_110 Hb_005306_040--Hb_000720_110 Hb_001481_030 Hb_001481_030 Hb_005306_040--Hb_001481_030 Hb_055147_010 Hb_055147_010 Hb_005306_040--Hb_055147_010 Hb_100873_040 Hb_100873_040 Hb_005306_040--Hb_100873_040 Hb_000692_180 Hb_000692_180 Hb_005306_040--Hb_000692_180 Hb_008111_020 Hb_008111_020 Hb_000343_280--Hb_008111_020 Hb_000343_280--Hb_100873_040 Hb_000512_080 Hb_000512_080 Hb_000343_280--Hb_000512_080 Hb_000059_290 Hb_000059_290 Hb_000343_280--Hb_000059_290 Hb_000408_010 Hb_000408_010 Hb_000343_280--Hb_000408_010 Hb_000720_110--Hb_001481_030 Hb_000720_110--Hb_000692_180 Hb_165404_010 Hb_165404_010 Hb_000720_110--Hb_165404_010 Hb_000720_110--Hb_055147_010 Hb_000075_110 Hb_000075_110 Hb_000720_110--Hb_000075_110 Hb_001424_080 Hb_001424_080 Hb_001481_030--Hb_001424_080 Hb_000223_050 Hb_000223_050 Hb_001481_030--Hb_000223_050 Hb_034342_010 Hb_034342_010 Hb_001481_030--Hb_034342_010 Hb_001481_030--Hb_000512_080 Hb_004785_120 Hb_004785_120 Hb_055147_010--Hb_004785_120 Hb_012404_050 Hb_012404_050 Hb_055147_010--Hb_012404_050 Hb_000996_200 Hb_000996_200 Hb_055147_010--Hb_000996_200 Hb_000110_330 Hb_000110_330 Hb_055147_010--Hb_000110_330 Hb_000862_060 Hb_000862_060 Hb_055147_010--Hb_000862_060 Hb_100873_040--Hb_000059_290 Hb_000203_030 Hb_000203_030 Hb_100873_040--Hb_000203_030 Hb_100873_040--Hb_000408_010 Hb_001998_190 Hb_001998_190 Hb_100873_040--Hb_001998_190 Hb_001663_100 Hb_001663_100 Hb_000692_180--Hb_001663_100 Hb_000692_180--Hb_001424_080 Hb_000692_180--Hb_034342_010 Hb_000462_020 Hb_000462_020 Hb_000692_180--Hb_000462_020 Hb_022998_010 Hb_022998_010 Hb_000692_180--Hb_022998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112821 0.0594654 0.0101469 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0826777 0

CAGE analysis