Hb_005306_100

Information

Type -
Description -
Location Contig5306: 69717-75435
Sequence    

Annotation

kegg
ID rcu:RCOM_0654980
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_002521379.1
description Phospholipid-transporting ATPase, putative [Ricinus communis]
swissprot
ID Q9SLK6
description Phospholipid-transporting ATPase 6 OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=2
trembl
ID B9S5W0
description Phospholipid-transporting ATPase OS=Ricinus communis GN=RCOM_0654980 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47360: 69240-69411 , PASA_asmbl_47361: 69532-69649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_100 0.0 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
2 Hb_000562_090 0.0943866605 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
3 Hb_004888_020 0.0997550217 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
4 Hb_002671_140 0.1003751833 - - calcium-dependent protein kinase [Hevea brasiliensis]
5 Hb_002681_050 0.1046821319 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
6 Hb_057878_010 0.1113813691 - - hypothetical protein VITISV_036304 [Vitis vinifera]
7 Hb_025623_020 0.1116382477 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
8 Hb_006951_020 0.1121528704 - - Rop3 [Hevea brasiliensis]
9 Hb_000755_030 0.1184366176 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
10 Hb_001083_050 0.1223077608 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
11 Hb_000322_100 0.1226554408 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
12 Hb_007477_080 0.1230396092 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001377_320 0.1233993319 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
14 Hb_002042_140 0.1248657802 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
15 Hb_002529_060 0.1270183272 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
16 Hb_005532_050 0.1275039755 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_003464_050 0.1280669138 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
18 Hb_000000_270 0.1282741895 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
19 Hb_008695_120 0.1295591091 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
20 Hb_006816_390 0.1296184613 - - protein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005306_100 Hb_005306_100 Hb_000562_090 Hb_000562_090 Hb_005306_100--Hb_000562_090 Hb_004888_020 Hb_004888_020 Hb_005306_100--Hb_004888_020 Hb_002671_140 Hb_002671_140 Hb_005306_100--Hb_002671_140 Hb_002681_050 Hb_002681_050 Hb_005306_100--Hb_002681_050 Hb_057878_010 Hb_057878_010 Hb_005306_100--Hb_057878_010 Hb_025623_020 Hb_025623_020 Hb_005306_100--Hb_025623_020 Hb_000562_090--Hb_002671_140 Hb_003609_030 Hb_003609_030 Hb_000562_090--Hb_003609_030 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_005993_020 Hb_005993_020 Hb_004888_020--Hb_005993_020 Hb_002163_030 Hb_002163_030 Hb_004888_020--Hb_002163_030 Hb_000062_250 Hb_000062_250 Hb_004888_020--Hb_000062_250 Hb_004888_020--Hb_000562_090 Hb_000134_090 Hb_000134_090 Hb_004888_020--Hb_000134_090 Hb_001680_010 Hb_001680_010 Hb_004888_020--Hb_001680_010 Hb_002671_140--Hb_003609_030 Hb_000442_150 Hb_000442_150 Hb_002671_140--Hb_000442_150 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_008246_040 Hb_008246_040 Hb_002671_140--Hb_008246_040 Hb_002671_140--Hb_057878_010 Hb_000606_090 Hb_000606_090 Hb_002681_050--Hb_000606_090 Hb_007477_080 Hb_007477_080 Hb_002681_050--Hb_007477_080 Hb_001377_320 Hb_001377_320 Hb_002681_050--Hb_001377_320 Hb_073171_040 Hb_073171_040 Hb_002681_050--Hb_073171_040 Hb_008511_130 Hb_008511_130 Hb_002681_050--Hb_008511_130 Hb_002529_060 Hb_002529_060 Hb_002681_050--Hb_002529_060 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_057878_010--Hb_000442_150 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380 Hb_025623_020--Hb_002163_030 Hb_025623_020--Hb_000562_090 Hb_010695_020 Hb_010695_020 Hb_025623_020--Hb_010695_020 Hb_008695_120 Hb_008695_120 Hb_025623_020--Hb_008695_120 Hb_002942_160 Hb_002942_160 Hb_025623_020--Hb_002942_160 Hb_003641_060 Hb_003641_060 Hb_025623_020--Hb_003641_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4993 13.6915 7.38411 9.50856 11.6866 16.8075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6504 5.5453 10.0967 1.96705 5.98961

CAGE analysis