Hb_005306_180

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex
Location Contig5306: 118323-124626
Sequence    

Annotation

kegg
ID rcu:RCOM_0654800
description dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative (EC:2.3.1.168)
nr
ID XP_012068936.1
description PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8RWN9
description Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=2 SV=2
trembl
ID A0A067L8E3
description Acetyltransferase component of pyruvate dehydrogenase complex OS=Jatropha curcas GN=JCGZ_24739 PE=3 SV=1
Gene Ontology
ID GO:0005759
description dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47373: 118267-124593
cDNA
(Sanger)
(ID:Location)		 035_N07.ab1: 118267-121660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_180 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
2 Hb_000483_260 0.0716831222 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
3 Hb_000665_050 0.074630711 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
4 Hb_000787_020 0.0773284612 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001016_120 0.0782475131 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
6 Hb_015778_010 0.0802469888 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
7 Hb_002014_020 0.0816599942 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
8 Hb_089032_030 0.0819973081 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
9 Hb_019654_030 0.0825119079 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
10 Hb_084646_010 0.0838500744 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
11 Hb_028227_070 0.0853736667 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
12 Hb_000116_270 0.0855493015 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
13 Hb_000363_360 0.0860808202 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
14 Hb_001218_030 0.0863451833 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
15 Hb_000200_020 0.0898439435 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
16 Hb_011344_190 0.0898862931 - - PREDICTED: maspardin [Jatropha curcas]
17 Hb_002481_080 0.091024379 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
18 Hb_000414_130 0.0910503004 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
19 Hb_000477_060 0.0919009047 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_005488_200 0.0919120975 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_180 Hb_005306_180 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_000665_050 Hb_000665_050 Hb_005306_180--Hb_000665_050 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_015778_010 Hb_015778_010 Hb_005306_180--Hb_015778_010 Hb_002014_020 Hb_002014_020 Hb_005306_180--Hb_002014_020 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_000665_050--Hb_001218_030 Hb_000414_130 Hb_000414_130 Hb_000665_050--Hb_000414_130 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150 Hb_084646_010 Hb_084646_010 Hb_000787_020--Hb_084646_010 Hb_000890_150 Hb_000890_150 Hb_000787_020--Hb_000890_150 Hb_155159_020 Hb_155159_020 Hb_000787_020--Hb_155159_020 Hb_000049_210 Hb_000049_210 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_002007_210 Hb_002007_210 Hb_015778_010--Hb_002007_210 Hb_006420_080 Hb_006420_080 Hb_015778_010--Hb_006420_080 Hb_003502_060 Hb_003502_060 Hb_015778_010--Hb_003502_060 Hb_015778_010--Hb_000414_130 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_002014_020--Hb_034380_020 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1887 13.8917 17.196 31.7082 9.43652 19.4036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.9181 31.1068 37.0317 33.3486 15.7593

CAGE analysis