Hb_005307_040

Information

Type -
Description -
Location Contig5307: 87865-89349
Sequence    

Annotation

kegg
ID rcu:RCOM_0504580
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_002534458.1
description gulonolactone oxidase, putative [Ricinus communis]
swissprot
ID O22213
description Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1
trembl
ID B9T889
description Gulonolactone oxidase, putative OS=Ricinus communis GN=RCOM_0504580 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005307_040 0.0 - - gulonolactone oxidase, putative [Ricinus communis]
2 Hb_000216_020 0.161655204 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
3 Hb_000732_080 0.1638872629 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
4 Hb_000120_970 0.1686237974 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
5 Hb_004126_080 0.1720696634 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
6 Hb_089100_040 0.1729595856 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
7 Hb_000107_560 0.1749126536 - - glutamate receptor 3 plant, putative [Ricinus communis]
8 Hb_012038_010 0.1764396628 - - phospholipid-transporting atpase, putative [Ricinus communis]
9 Hb_000613_220 0.1887658823 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
10 Hb_003120_070 0.1908296165 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000866_370 0.1908491224 - - synaptotagmin, putative [Ricinus communis]
12 Hb_004976_040 0.1908913252 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
13 Hb_004994_300 0.1927710034 - - synaptotagmin, putative [Ricinus communis]
14 Hb_002686_400 0.193046094 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
15 Hb_004800_240 0.1934507787 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
16 Hb_002387_070 0.1956377519 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
17 Hb_009193_110 0.1961602945 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
18 Hb_000362_090 0.1971346817 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
19 Hb_036568_010 0.1971375831 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
20 Hb_000069_780 0.1975884086 - - atpob1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005307_040 Hb_005307_040 Hb_000216_020 Hb_000216_020 Hb_005307_040--Hb_000216_020 Hb_000732_080 Hb_000732_080 Hb_005307_040--Hb_000732_080 Hb_000120_970 Hb_000120_970 Hb_005307_040--Hb_000120_970 Hb_004126_080 Hb_004126_080 Hb_005307_040--Hb_004126_080 Hb_089100_040 Hb_089100_040 Hb_005307_040--Hb_089100_040 Hb_000107_560 Hb_000107_560 Hb_005307_040--Hb_000107_560 Hb_000059_130 Hb_000059_130 Hb_000216_020--Hb_000059_130 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000371_060 Hb_000371_060 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_008667_060 Hb_008667_060 Hb_000216_020--Hb_008667_060 Hb_000069_780 Hb_000069_780 Hb_000216_020--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_000732_080--Hb_103788_010 Hb_000732_080--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000732_080--Hb_004162_120 Hb_006054_030 Hb_006054_030 Hb_000732_080--Hb_006054_030 Hb_080451_010 Hb_080451_010 Hb_000732_080--Hb_080451_010 Hb_005096_010 Hb_005096_010 Hb_000732_080--Hb_005096_010 Hb_000120_970--Hb_000107_560 Hb_000120_970--Hb_080451_010 Hb_000521_170 Hb_000521_170 Hb_000120_970--Hb_000521_170 Hb_011828_030 Hb_011828_030 Hb_000120_970--Hb_011828_030 Hb_020178_060 Hb_020178_060 Hb_000120_970--Hb_020178_060 Hb_000120_970--Hb_089100_040 Hb_148682_010 Hb_148682_010 Hb_004126_080--Hb_148682_010 Hb_001699_150 Hb_001699_150 Hb_004126_080--Hb_001699_150 Hb_004800_240 Hb_004800_240 Hb_004126_080--Hb_004800_240 Hb_001646_010 Hb_001646_010 Hb_004126_080--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_004126_080--Hb_001195_020 Hb_159295_010 Hb_159295_010 Hb_004126_080--Hb_159295_010 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000866_370 Hb_000866_370 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030 Hb_000107_560--Hb_080451_010 Hb_000107_560--Hb_089100_040 Hb_000107_560--Hb_004162_120 Hb_000107_560--Hb_065500_030 Hb_000107_560--Hb_009897_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128305 2.46442 0.286381 0.905615 0.862996 0.39167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0903274 0.390765 0.0657655 0.883849 0.585058

CAGE analysis