Hb_005307_050

Information

Type -
Description -
Location Contig5307: 140737-146203
Sequence    

Annotation

kegg
ID vvi:100255501
description uncharacterized LOC100255501
nr
ID XP_012086228.1
description PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
swissprot
ID Q93V66
description Protein FATTY ACID EXPORT 1, chloroplastic OS=Arabidopsis thaliana GN=FAX1 PE=2 SV=1
trembl
ID A0A067JQ60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21129 PE=4 SV=1
Gene Ontology
ID GO:0009706
description transmembrane proteins isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47379: 141448-141668 , PASA_asmbl_47380: 141753-145912
cDNA
(Sanger)
(ID:Location)		 013_H22.ab1: 142364-145912 , 014_N20.ab1: 142231-145891 , 020_J04.ab1: 142090-145907 , 039_I01.ab1: 142089-145890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005307_050 0.0 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
2 Hb_000808_190 0.0809698 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
3 Hb_007928_030 0.082183534 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
4 Hb_186982_040 0.0853901859 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
5 Hb_000212_290 0.0899393081 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
6 Hb_008695_050 0.0904773572 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001242_140 0.0915666611 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_000922_040 0.0934150087 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
9 Hb_003098_020 0.0978666725 - - 40S ribosomal protein S5B [Hevea brasiliensis]
10 Hb_104265_040 0.0992441475 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001222_080 0.1004345501 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
12 Hb_000028_350 0.1010895028 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
13 Hb_002613_020 0.101615405 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
14 Hb_072922_020 0.1030651228 - - SNARE-like superfamily protein [Theobroma cacao]
15 Hb_000016_080 0.1044086649 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
16 Hb_001054_100 0.1044224571 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
17 Hb_000030_200 0.1045845567 - - PREDICTED: early nodulin-93-like [Populus euphratica]
18 Hb_006573_020 0.1051356675 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
19 Hb_017491_060 0.1055089544 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
20 Hb_000431_070 0.1065366747 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

Gene co-expression network

sample Hb_005307_050 Hb_005307_050 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_007928_030 Hb_007928_030 Hb_005307_050--Hb_007928_030 Hb_186982_040 Hb_186982_040 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_006573_020 Hb_006573_020 Hb_000808_190--Hb_006573_020 Hb_001353_010 Hb_001353_010 Hb_000808_190--Hb_001353_010 Hb_000028_350 Hb_000028_350 Hb_000808_190--Hb_000028_350 Hb_002000_140 Hb_002000_140 Hb_000808_190--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_000808_190--Hb_002303_060 Hb_007894_060 Hb_007894_060 Hb_007928_030--Hb_007894_060 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000538_120 Hb_000538_120 Hb_007928_030--Hb_000538_120 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_005914_170 Hb_005914_170 Hb_007928_030--Hb_005914_170 Hb_000136_350 Hb_000136_350 Hb_186982_040--Hb_000136_350 Hb_003098_020 Hb_003098_020 Hb_186982_040--Hb_003098_020 Hb_186982_040--Hb_000538_120 Hb_186982_040--Hb_007928_030 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340 Hb_001222_080 Hb_001222_080 Hb_000212_290--Hb_001222_080 Hb_000212_290--Hb_007928_030 Hb_000483_300 Hb_000483_300 Hb_000212_290--Hb_000483_300 Hb_000212_290--Hb_001353_010 Hb_000431_070 Hb_000431_070 Hb_000212_290--Hb_000431_070 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_008695_050--Hb_007928_030 Hb_002613_020 Hb_002613_020 Hb_001242_140--Hb_002613_020 Hb_001019_150 Hb_001019_150 Hb_001242_140--Hb_001019_150 Hb_003106_100 Hb_003106_100 Hb_001242_140--Hb_003106_100 Hb_016734_070 Hb_016734_070 Hb_001242_140--Hb_016734_070 Hb_001242_140--Hb_186982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.50269 7.74804 10.9429 27.7517 9.35944 14.6754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2893 46.8133 18.0999 25.4547 17.5256

CAGE analysis