Hb_005314_010

Information

Type -
Description -
Location Contig5314: 12618-18968
Sequence    

Annotation

kegg
ID rcu:RCOM_0862780
description nucleotide binding protein, putative
nr
ID XP_002522890.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID Q5E915
description Protein RBL OS=Arabidopsis thaliana GN=RBL PE=1 SV=1
trembl
ID B9SA71
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0862780 PE=4 SV=1
Gene Ontology
ID GO:0048188
description protein rbl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47397: 12689-18949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005314_010 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_000001_180 0.0656665323 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
3 Hb_002818_040 0.0659040757 - - tRNA synthetase-related family protein [Populus trichocarpa]
4 Hb_000413_130 0.0689005542 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
5 Hb_024399_010 0.0737205206 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
6 Hb_005914_230 0.0753247462 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
7 Hb_029281_010 0.0761846561 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
8 Hb_002169_010 0.0797585503 - - PREDICTED: la-related protein 6B [Jatropha curcas]
9 Hb_160818_010 0.0810988198 - - -
10 Hb_005147_110 0.0838230996 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
11 Hb_000152_890 0.0839578516 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
12 Hb_004032_350 0.0843885827 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
13 Hb_042083_070 0.0844741465 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
14 Hb_000367_290 0.0850350095 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
15 Hb_000076_290 0.0860233312 - - translation factor sui1, putative [Ricinus communis]
16 Hb_003384_030 0.0871955846 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
17 Hb_005725_070 0.0898700867 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000340_510 0.0899765041 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
19 Hb_001439_180 0.0906342534 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
20 Hb_011496_010 0.0913173864 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005314_010 Hb_005314_010 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_002818_040 Hb_002818_040 Hb_005314_010--Hb_002818_040 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_003384_030 Hb_003384_030 Hb_000001_180--Hb_003384_030 Hb_000001_180--Hb_002818_040 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_000001_180--Hb_005914_230 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_005914_230 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_024399_010--Hb_002818_040 Hb_024399_010--Hb_000340_510 Hb_005914_230--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
245.505 114.082 28.1352 22.9833 251.375 219.431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.049 70.6595 127.563 47.3978 16.342

CAGE analysis