Hb_005318_020

Information

Type -
Description -
Location Contig5318: 46468-46731
Sequence    

Annotation

kegg
ID rcu:RCOM_1289750
description phosphatidylcholine-sterol O-acyltransferase, putative
nr
ID XP_012074012.1
description PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
swissprot
ID Q71N54
description Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana GN=LCAT4 PE=1 SV=1
trembl
ID A0A067KK09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08597 PE=4 SV=1
Gene Ontology
ID GO:0005829
description lecithin-cholesterol acyltransferase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005318_020 0.0 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
2 Hb_079978_010 0.1265110485 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
3 Hb_007083_050 0.1312768627 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
4 Hb_007447_020 0.1393805022 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
5 Hb_000683_090 0.1461886814 - - stress enhanced protein [Medicago truncatula]
6 Hb_169170_010 0.1464071409 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
7 Hb_000084_130 0.1657379849 - - -
8 Hb_122567_020 0.1722976343 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
9 Hb_007188_030 0.1745101193 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
10 Hb_031866_050 0.1769030223 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
11 Hb_008096_020 0.1797191472 - - -
12 Hb_177103_010 0.180866645 - - PREDICTED: histone H2AX [Elaeis guineensis]
13 Hb_003030_040 0.1958435379 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
14 Hb_000617_170 0.1966238373 - - -
15 Hb_079212_010 0.2025957179 - - conserved hypothetical protein [Ricinus communis]
16 Hb_052402_010 0.2049953516 - - -
17 Hb_003656_150 0.2063033217 - - -
18 Hb_060458_010 0.2067239446 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000340_330 0.207519301 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
20 Hb_001222_040 0.2087215212 - - -

Gene co-expression network

sample Hb_005318_020 Hb_005318_020 Hb_079978_010 Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_007447_020 Hb_007447_020 Hb_005318_020--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_005318_020--Hb_000683_090 Hb_169170_010 Hb_169170_010 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_079978_010--Hb_007083_050 Hb_122567_020 Hb_122567_020 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_079978_010--Hb_000805_300 Hb_079978_010--Hb_007447_020 Hb_007083_050--Hb_169170_010 Hb_177103_010 Hb_177103_010 Hb_007083_050--Hb_177103_010 Hb_007083_050--Hb_000084_130 Hb_007083_050--Hb_122567_020 Hb_031866_050 Hb_031866_050 Hb_007447_020--Hb_031866_050 Hb_007447_020--Hb_000683_090 Hb_007447_020--Hb_169170_010 Hb_007447_020--Hb_122567_020 Hb_008096_020 Hb_008096_020 Hb_000683_090--Hb_008096_020 Hb_000683_090--Hb_031866_050 Hb_001222_040 Hb_001222_040 Hb_000683_090--Hb_001222_040 Hb_000683_090--Hb_169170_010 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_000084_130--Hb_008096_020 Hb_003656_150 Hb_003656_150 Hb_000084_130--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_000084_130--Hb_006995_010 Hb_000084_130--Hb_177103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7447 11.103 6.79019 166.92 27.5478 528.414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1929 13.8407 24.3515 52.9746 27.3982

CAGE analysis