Hb_005322_030

Information

Type -
Description -
Location Contig5322: 47147-53042
Sequence    

Annotation

kegg
ID rcu:RCOM_0657470
description rRNA-processing protein UTP23, putative
nr
ID XP_012066270.1
description PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
swissprot
ID Q9BRU9
description rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2
trembl
ID A0A067L6N2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23835 PE=4 SV=1
Gene Ontology
ID GO:0032040
description rrna-processing protein utp23 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005322_030 0.0 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
2 Hb_000465_120 0.111492296 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
3 Hb_005803_010 0.1187754347 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001196_070 0.1193992036 - - nucleolar protein nop56, putative [Ricinus communis]
5 Hb_000345_530 0.1221234072 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
6 Hb_000976_080 0.1228824932 - - hypothetical protein VITISV_034376 [Vitis vinifera]
7 Hb_000281_100 0.1270939689 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
8 Hb_033594_020 0.1306628731 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
9 Hb_005846_020 0.1307504854 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
10 Hb_000230_370 0.1339646419 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
11 Hb_004656_060 0.1345528528 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
12 Hb_000291_120 0.1351601553 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
13 Hb_109168_010 0.1355822713 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
14 Hb_011639_050 0.1356594058 - - conserved hypothetical protein [Ricinus communis]
15 Hb_046615_020 0.1367742988 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_003006_060 0.1371209399 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
17 Hb_004993_010 0.1377349607 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
18 Hb_000453_190 0.1390986271 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
19 Hb_000540_140 0.1396967669 - - zinc binding dehydrogenase, putative [Ricinus communis]
20 Hb_009421_100 0.1401694265 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]

Gene co-expression network

sample Hb_005322_030 Hb_005322_030 Hb_000465_120 Hb_000465_120 Hb_005322_030--Hb_000465_120 Hb_005803_010 Hb_005803_010 Hb_005322_030--Hb_005803_010 Hb_001196_070 Hb_001196_070 Hb_005322_030--Hb_001196_070 Hb_000345_530 Hb_000345_530 Hb_005322_030--Hb_000345_530 Hb_000976_080 Hb_000976_080 Hb_005322_030--Hb_000976_080 Hb_000281_100 Hb_000281_100 Hb_005322_030--Hb_000281_100 Hb_001498_030 Hb_001498_030 Hb_000465_120--Hb_001498_030 Hb_000849_150 Hb_000849_150 Hb_000465_120--Hb_000849_150 Hb_004531_090 Hb_004531_090 Hb_000465_120--Hb_004531_090 Hb_001408_090 Hb_001408_090 Hb_000465_120--Hb_001408_090 Hb_000742_250 Hb_000742_250 Hb_000465_120--Hb_000742_250 Hb_005846_020 Hb_005846_020 Hb_005803_010--Hb_005846_020 Hb_005803_010--Hb_000345_530 Hb_018790_070 Hb_018790_070 Hb_005803_010--Hb_018790_070 Hb_005803_010--Hb_000976_080 Hb_152453_010 Hb_152453_010 Hb_005803_010--Hb_152453_010 Hb_002249_160 Hb_002249_160 Hb_005803_010--Hb_002249_160 Hb_005129_050 Hb_005129_050 Hb_001196_070--Hb_005129_050 Hb_001278_060 Hb_001278_060 Hb_001196_070--Hb_001278_060 Hb_001433_190 Hb_001433_190 Hb_001196_070--Hb_001433_190 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_000120_510 Hb_000120_510 Hb_001196_070--Hb_000120_510 Hb_001301_210 Hb_001301_210 Hb_001196_070--Hb_001301_210 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_000345_530--Hb_002249_160 Hb_000345_530--Hb_000976_080 Hb_000976_080--Hb_152453_010 Hb_000976_080--Hb_005846_020 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_005695_060 Hb_005695_060 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120 Hb_000088_200 Hb_000088_200 Hb_000281_100--Hb_000088_200 Hb_003006_060 Hb_003006_060 Hb_000281_100--Hb_003006_060 Hb_171900_100 Hb_171900_100 Hb_000281_100--Hb_171900_100 Hb_000042_210 Hb_000042_210 Hb_000281_100--Hb_000042_210 Hb_004195_280 Hb_004195_280 Hb_000281_100--Hb_004195_280 Hb_004993_010 Hb_004993_010 Hb_000281_100--Hb_004993_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.45672 2.11556 3.63142 0.609152 10.3999 9.82458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82625 1.84157 3.81174 2.76567 1.36223

CAGE analysis