Hb_005322_050

Information

Type -
Description -
Location Contig5322: 58846-66399
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02400g
description POPTRDRAFT_650389; hypothetical protein
nr
ID XP_002314247.1
description hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID A9PHC2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s02400g PE=2 SV=1
Gene Ontology
ID GO:0004714
description somatic embryogenesis receptor kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47423: 62055-66414 , PASA_asmbl_47424: 65457-65767
cDNA
(Sanger)
(ID:Location)		 005_M15.ab1: 64303-66363 , 021_M08.ab1: 64494-66378 , 034_M05.ab1: 64281-66414 , 050_B11.ab1: 64987-66367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005322_050 0.0 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
2 Hb_000300_550 0.0451916079 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_000302_170 0.0492064697 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
4 Hb_172257_010 0.0576192881 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
5 Hb_007163_060 0.0590651345 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
6 Hb_000958_080 0.0720672825 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027654_020 0.0749266188 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
8 Hb_073171_090 0.0776746621 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
9 Hb_007800_020 0.0785664366 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
10 Hb_000580_030 0.0789381752 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
11 Hb_009449_060 0.079204294 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_152910_010 0.0807105065 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
13 Hb_000866_450 0.0822349461 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000994_020 0.084161839 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
15 Hb_001623_110 0.0845566188 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
16 Hb_006022_010 0.0852785192 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
17 Hb_000608_350 0.0855744245 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
18 Hb_102438_030 0.0879911798 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
19 Hb_000958_150 0.0910878257 - - Actin, putative [Ricinus communis]
20 Hb_015026_100 0.0910981308 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]

Gene co-expression network

sample Hb_005322_050 Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_172257_010 Hb_172257_010 Hb_005322_050--Hb_172257_010 Hb_007163_060 Hb_007163_060 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_000300_550--Hb_027654_020 Hb_000300_550--Hb_172257_010 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_007163_060 Hb_009449_060 Hb_009449_060 Hb_172257_010--Hb_009449_060 Hb_172257_010--Hb_000302_170 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_007163_060--Hb_000300_550 Hb_007163_060--Hb_009449_060 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_000958_080--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0333 37.7268 42.9383 38.9015 27.6451 20.3085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7775 10.7632 8.14248 20.78 16.2737

CAGE analysis