Hb_005324_010

Information

Type -
Description -
Location Contig5324: 8503-16701
Sequence    

Annotation

kegg
ID rcu:RCOM_0940570
description Chaperone protein dnaJ, putative
nr
ID XP_002514419.1
description Chaperone protein dnaJ, putative [Ricinus communis]
swissprot
ID Q04960
description DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1
trembl
ID Q0PGF2
description Chaperone protein dnaJ, putative OS=Ricinus communis GN=RCOM_0940570 PE=2 SV=1
Gene Ontology
ID GO:0005524
description dnaj protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47426: 8444-11707 , PASA_asmbl_47427: 8531-9979
cDNA
(Sanger)
(ID:Location)		 010_N14.ab1: 9520-11047 , 016_N08.ab1: 8500-10076 , 018_J13.ab1: 8707-9430 , 023_O21.ab1: 9651-10954 , 033_D08.ab1: 8500-9957 , 035_I11.ab1: 9520-11039 , 045_I02.ab1: 9444-10389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005324_010 0.0 - - Chaperone protein dnaJ, putative [Ricinus communis]
2 Hb_005306_130 0.0710334174 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_004734_060 0.0784557009 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
4 Hb_000209_020 0.0805326914 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
5 Hb_000953_010 0.0839038011 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
6 Hb_000836_360 0.0840685931 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
7 Hb_033152_080 0.0856792909 - - RNA-binding protein Nova-1, putative [Ricinus communis]
8 Hb_000184_130 0.0875406804 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
9 Hb_001516_100 0.0932768827 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
10 Hb_008085_010 0.0967395543 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
11 Hb_006452_030 0.0975509506 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000173_400 0.0976079581 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
13 Hb_001663_030 0.0982741764 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_000803_190 0.0986122583 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_000062_240 0.0991700647 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
16 Hb_000139_240 0.0993141887 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
17 Hb_000011_080 0.1006247069 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
18 Hb_001789_090 0.1024089377 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
19 Hb_000059_210 0.1027485773 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003494_240 0.1037823487 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]

Gene co-expression network

sample Hb_005324_010 Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_005324_010--Hb_005306_130 Hb_004734_060 Hb_004734_060 Hb_005324_010--Hb_004734_060 Hb_000209_020 Hb_000209_020 Hb_005324_010--Hb_000209_020 Hb_000953_010 Hb_000953_010 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_033152_080 Hb_033152_080 Hb_005324_010--Hb_033152_080 Hb_005306_130--Hb_004734_060 Hb_005306_130--Hb_033152_080 Hb_005306_130--Hb_000209_020 Hb_000139_240 Hb_000139_240 Hb_005306_130--Hb_000139_240 Hb_000059_210 Hb_000059_210 Hb_005306_130--Hb_000059_210 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_000209_020--Hb_000184_130 Hb_000209_020--Hb_033152_080 Hb_000209_020--Hb_000139_240 Hb_001943_010 Hb_001943_010 Hb_000209_020--Hb_001943_010 Hb_000953_010--Hb_000803_190 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_000836_360--Hb_001516_100 Hb_000836_360--Hb_000184_130 Hb_033152_080--Hb_000803_190 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_033152_080--Hb_000184_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1031.56 759.27 109.295 260.972 713.177 1351.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
814.796 565.778 952.309 588.519 118.089

CAGE analysis