Hb_005329_020

Information

Type -
Description -
Location Contig5329: 20531-21652
Sequence    

Annotation

kegg
ID rcu:RCOM_0906840
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012091445.1
description PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
swissprot
ID O81902
description U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1
trembl
ID A0A067JAP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21313 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47432: 20422-24220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005329_020 0.0 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
2 Hb_000696_340 0.0856098155 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
3 Hb_000329_630 0.0914357219 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
4 Hb_000571_120 0.1010625917 - - importin beta-1, putative [Ricinus communis]
5 Hb_000395_080 0.1015190575 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
6 Hb_005056_060 0.1021149248 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
7 Hb_000877_060 0.1034059436 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
8 Hb_007441_230 0.1043954182 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
9 Hb_001248_050 0.1078260612 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
10 Hb_031421_020 0.1079129214 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
11 Hb_002137_020 0.1082125043 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_012022_030 0.1084265976 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
13 Hb_004678_050 0.1088429575 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
14 Hb_000329_650 0.1089135066 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
15 Hb_002685_020 0.1094173176 - - -
16 Hb_007441_200 0.1107430778 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
17 Hb_011828_020 0.1119294294 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
18 Hb_004310_030 0.1130055132 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
19 Hb_029879_110 0.1133586316 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
20 Hb_009954_040 0.1152871397 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_005329_020 Hb_005329_020 Hb_000696_340 Hb_000696_340 Hb_005329_020--Hb_000696_340 Hb_000329_630 Hb_000329_630 Hb_005329_020--Hb_000329_630 Hb_000571_120 Hb_000571_120 Hb_005329_020--Hb_000571_120 Hb_000395_080 Hb_000395_080 Hb_005329_020--Hb_000395_080 Hb_005056_060 Hb_005056_060 Hb_005329_020--Hb_005056_060 Hb_000877_060 Hb_000877_060 Hb_005329_020--Hb_000877_060 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_005054_290 Hb_005054_290 Hb_000329_630--Hb_005054_290 Hb_001439_100 Hb_001439_100 Hb_000329_630--Hb_001439_100 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000000_460 Hb_000000_460 Hb_000329_630--Hb_000000_460 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000395_080--Hb_000696_340 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030 Hb_004108_080 Hb_004108_080 Hb_005056_060--Hb_004108_080 Hb_000567_030 Hb_000567_030 Hb_005056_060--Hb_000567_030 Hb_005056_060--Hb_000395_080 Hb_004310_030 Hb_004310_030 Hb_005056_060--Hb_004310_030 Hb_007254_040 Hb_007254_040 Hb_005056_060--Hb_007254_040 Hb_004221_010 Hb_004221_010 Hb_000877_060--Hb_004221_010 Hb_000877_060--Hb_012022_030 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_000877_060--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9829 19.8046 4.15527 11.5246 16.2154 34.8927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.2097 33.634 29.055 27.4957 15.1936

CAGE analysis