Hb_005332_010

Information

Type -
Description -
Location Contig5332: 22657-32392
Sequence    

Annotation

kegg
ID rcu:RCOM_0530750
description hypothetical protein
nr
ID KCW52976.1
description hypothetical protein EUGRSUZ_J02276 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AH59
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02276 PE=4 SV=1
Gene Ontology
ID GO:0016023
description protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_010 0.0 - - hypothetical protein EUGRSUZ_J02276 [Eucalyptus grandis]
2 Hb_004551_050 0.1294539647 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
3 Hb_001454_290 0.1778199834 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
4 Hb_001634_030 0.1789977856 - - Receptor like protein 1, putative [Theobroma cacao]
5 Hb_001532_060 0.1826910371 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
6 Hb_006262_030 0.1861065206 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_004525_110 0.1934929084 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
8 Hb_000567_060 0.1939967432 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
9 Hb_000723_050 0.1984211777 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
10 Hb_068804_070 0.198502168 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
11 Hb_009767_030 0.1995512883 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
12 Hb_130498_010 0.2022609685 - - Laccase 17 [Theobroma cacao]
13 Hb_001649_050 0.2037790846 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
14 Hb_004703_010 0.2052704953 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
15 Hb_000529_040 0.2069700827 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
16 Hb_000958_040 0.2083368681 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
17 Hb_022092_050 0.2117945197 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
18 Hb_001345_020 0.2120834309 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
19 Hb_000181_270 0.2169736423 - - ATP binding protein, putative [Ricinus communis]
20 Hb_008143_050 0.2171283027 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005332_010 Hb_005332_010 Hb_004551_050 Hb_004551_050 Hb_005332_010--Hb_004551_050 Hb_001454_290 Hb_001454_290 Hb_005332_010--Hb_001454_290 Hb_001634_030 Hb_001634_030 Hb_005332_010--Hb_001634_030 Hb_001532_060 Hb_001532_060 Hb_005332_010--Hb_001532_060 Hb_006262_030 Hb_006262_030 Hb_005332_010--Hb_006262_030 Hb_004525_110 Hb_004525_110 Hb_005332_010--Hb_004525_110 Hb_004551_050--Hb_001634_030 Hb_022092_050 Hb_022092_050 Hb_004551_050--Hb_022092_050 Hb_000567_060 Hb_000567_060 Hb_004551_050--Hb_000567_060 Hb_000723_050 Hb_000723_050 Hb_004551_050--Hb_000723_050 Hb_004551_050--Hb_004525_110 Hb_002871_050 Hb_002871_050 Hb_001454_290--Hb_002871_050 Hb_005679_110 Hb_005679_110 Hb_001454_290--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001454_290--Hb_001345_020 Hb_005730_070 Hb_005730_070 Hb_001454_290--Hb_005730_070 Hb_002110_060 Hb_002110_060 Hb_001454_290--Hb_002110_060 Hb_001454_290--Hb_000723_050 Hb_006294_030 Hb_006294_030 Hb_001634_030--Hb_006294_030 Hb_137272_010 Hb_137272_010 Hb_001634_030--Hb_137272_010 Hb_001634_030--Hb_000567_060 Hb_068804_070 Hb_068804_070 Hb_001634_030--Hb_068804_070 Hb_003881_020 Hb_003881_020 Hb_001634_030--Hb_003881_020 Hb_004703_010 Hb_004703_010 Hb_001532_060--Hb_004703_010 Hb_002081_220 Hb_002081_220 Hb_001532_060--Hb_002081_220 Hb_001288_020 Hb_001288_020 Hb_001532_060--Hb_001288_020 Hb_021888_010 Hb_021888_010 Hb_001532_060--Hb_021888_010 Hb_001532_060--Hb_000723_050 Hb_009767_030 Hb_009767_030 Hb_001532_060--Hb_009767_030 Hb_002045_260 Hb_002045_260 Hb_006262_030--Hb_002045_260 Hb_006262_030--Hb_004703_010 Hb_042098_010 Hb_042098_010 Hb_006262_030--Hb_042098_010 Hb_008080_030 Hb_008080_030 Hb_006262_030--Hb_008080_030 Hb_006262_030--Hb_001454_290 Hb_006262_030--Hb_001634_030 Hb_008554_090 Hb_008554_090 Hb_004525_110--Hb_008554_090 Hb_004525_110--Hb_022092_050 Hb_000696_030 Hb_000696_030 Hb_004525_110--Hb_000696_030 Hb_033312_050 Hb_033312_050 Hb_004525_110--Hb_033312_050 Hb_001349_020 Hb_001349_020 Hb_004525_110--Hb_001349_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0176334 0.14319 0.653646 0.190862 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.064639 0.0127162 0 0.368412 0.0541561

CAGE analysis