Hb_005332_070

Information

Type -
Description -
Location Contig5332: 70774-74331
Sequence    

Annotation

kegg
ID rcu:RCOM_1517910
description hypothetical protein
nr
ID XP_012070268.1
description PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4X2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02575 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47443: 71236-71848 , PASA_asmbl_47444: 70813-71850 , PASA_asmbl_47445: 71884-72392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_070 0.0 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
2 Hb_011571_020 0.0659642435 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
3 Hb_000473_040 0.0704419105 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
4 Hb_000089_220 0.0785803538 - - PREDICTED: protein FAM133-like [Populus euphratica]
5 Hb_011360_140 0.0811720769 - - 40S ribosomal protein S19, putative [Ricinus communis]
6 Hb_012762_050 0.0814742101 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
7 Hb_003001_140 0.0821637034 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
8 Hb_000663_040 0.0823583112 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
9 Hb_135545_010 0.0825439936 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_006185_050 0.0837936991 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
11 Hb_000019_230 0.0839072916 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_005694_110 0.0845526005 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
13 Hb_000661_250 0.0846711961 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
14 Hb_001195_760 0.0854606 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
15 Hb_001301_160 0.0876241604 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
16 Hb_005535_050 0.0895681655 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_001117_100 0.0896151867 - - 40S ribosomal protein S16A [Hevea brasiliensis]
18 Hb_011609_100 0.0900856144 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
19 Hb_000015_080 0.0905314121 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_001898_230 0.0905339744 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005332_070 Hb_005332_070 Hb_011571_020 Hb_011571_020 Hb_005332_070--Hb_011571_020 Hb_000473_040 Hb_000473_040 Hb_005332_070--Hb_000473_040 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_011360_140 Hb_011360_140 Hb_005332_070--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140 Hb_011571_020--Hb_011360_140 Hb_011571_020--Hb_003001_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_011571_020--Hb_000473_040 Hb_000473_040--Hb_011360_140 Hb_000473_040--Hb_012762_050 Hb_135545_010 Hb_135545_010 Hb_000473_040--Hb_135545_010 Hb_002007_060 Hb_002007_060 Hb_000473_040--Hb_002007_060 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_011360_140--Hb_005993_040 Hb_012762_050--Hb_135545_010 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_001512_070 Hb_001512_070 Hb_012762_050--Hb_001512_070 Hb_012762_050--Hb_002007_060 Hb_012762_050--Hb_011571_020 Hb_003001_140--Hb_001301_160 Hb_003001_140--Hb_006185_050 Hb_000056_200 Hb_000056_200 Hb_003001_140--Hb_000056_200 Hb_000398_180 Hb_000398_180 Hb_003001_140--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0187 6.73607 4.9087 2.61303 12.1947 12.231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57678 14.7958 7.97041 3.5809 2.88441

CAGE analysis