Hb_005332_080

Information

Type -
Description -
Location Contig5332: 75054-77802
Sequence    

Annotation

kegg
ID rcu:RCOM_0530950
description succinate dehydrogenase, putative (EC:1.3.5.1)
nr
ID XP_012071382.1
description PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8LB02
description Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2
trembl
ID A0A067LPB8
description Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Jatropha curcas GN=JCGZ_10199 PE=3 SV=1
Gene Ontology
ID GO:0009055
description succinate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47449: 75031-77866 , PASA_asmbl_47450: 76864-77843 , PASA_asmbl_47452: 75617-76172 , PASA_asmbl_47454: 76701-76861
cDNA
(Sanger)
(ID:Location)		 029_O14.ab1: 77385-77860 , 042_D12.ab1: 75777-77806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_080 0.0 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
2 Hb_000537_100 0.1003671695 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_000318_220 0.1017835649 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029622_120 0.1035729585 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
5 Hb_002871_040 0.1043449301 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
6 Hb_002218_020 0.1045454505 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_021576_150 0.1066078181 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
8 Hb_000566_050 0.1081836046 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
9 Hb_007558_090 0.1084449652 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001541_110 0.1088841953 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_027506_040 0.1097135841 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
12 Hb_006588_190 0.1098487137 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
13 Hb_005946_040 0.1106137396 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
14 Hb_001587_180 0.1124653849 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
15 Hb_000926_080 0.1126106771 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
16 Hb_011476_030 0.1132042749 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
17 Hb_009771_060 0.1137853747 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
18 Hb_003883_010 0.1146933845 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
19 Hb_014497_100 0.1146950656 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
20 Hb_012286_020 0.1156040705 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]

Gene co-expression network

sample Hb_005332_080 Hb_005332_080 Hb_000537_100 Hb_000537_100 Hb_005332_080--Hb_000537_100 Hb_000318_220 Hb_000318_220 Hb_005332_080--Hb_000318_220 Hb_029622_120 Hb_029622_120 Hb_005332_080--Hb_029622_120 Hb_002871_040 Hb_002871_040 Hb_005332_080--Hb_002871_040 Hb_002218_020 Hb_002218_020 Hb_005332_080--Hb_002218_020 Hb_021576_150 Hb_021576_150 Hb_005332_080--Hb_021576_150 Hb_000537_100--Hb_029622_120 Hb_005946_040 Hb_005946_040 Hb_000537_100--Hb_005946_040 Hb_073973_090 Hb_073973_090 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_000327_330 Hb_000327_330 Hb_000318_220--Hb_000327_330 Hb_001799_160 Hb_001799_160 Hb_000318_220--Hb_001799_160 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_000318_220--Hb_002218_020 Hb_001504_010 Hb_001504_010 Hb_000318_220--Hb_001504_010 Hb_001053_190 Hb_001053_190 Hb_000318_220--Hb_001053_190 Hb_007558_090 Hb_007558_090 Hb_029622_120--Hb_007558_090 Hb_029622_120--Hb_005946_040 Hb_000723_030 Hb_000723_030 Hb_029622_120--Hb_000723_030 Hb_001900_140 Hb_001900_140 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100 Hb_003835_110 Hb_003835_110 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_002218_020--Hb_003883_010 Hb_000003_680 Hb_000003_680 Hb_021576_150--Hb_000003_680 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_012286_020 Hb_012286_020 Hb_021576_150--Hb_012286_020 Hb_000566_050 Hb_000566_050 Hb_021576_150--Hb_000566_050 Hb_000787_080 Hb_000787_080 Hb_021576_150--Hb_000787_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.3731 81.6018 272.445 92.1917 40.4811 25.8655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.0835 82.4085 64.5482 51.6858 128.042

CAGE analysis